View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6875A_low_73 (Length: 331)
Name: NF6875A_low_73
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_73 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 27775064 - 27774750
Alignment:
| Q |
17 |
gacatcatttatcttttacatttttatcttttgacatgttaaatttagaatacatctttattttccaaccaccaggataactacggctgttgtttatctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27775064 |
gacatcatttatcttttacatttttatcttttgacatgttaaatttagaatacatctttattttccaaccaccaggataactacggctgttgtttatctt |
27774965 |
T |
|
| Q |
117 |
cattgttttcaattatatcaaacagacatgctattgttgttttttactacaaattataacatttgcatctactctaagatattttcccttacattgattt |
216 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27774964 |
ctttgttttcaattatatcaaacagacatgctattgttgttttttactacaaatgataacatttgcatctactctaagatatttttccttacattgattt |
27774865 |
T |
|
| Q |
217 |
ttatattgcagatgctgagggatgactcccttcccgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgaggagagtactgctac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27774864 |
ttatattgcagatgctgagggatgactcccttcctgtttgcttacctgagaaagtacatgatgtgaaattgggcgactcagctgaggagagtactgctac |
27774765 |
T |
|
| Q |
317 |
tcctgcaaccaatga |
331 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
27774764 |
tcctgcaaccaatga |
27774750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University