View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_75 (Length: 330)
Name: NF6875A_low_75
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_75 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 2842866 - 2842537
Alignment:
| Q |
1 |
agagatgaatattatgcaagagatccttataagaagggaaagggagaatcnnnnnnnggaaaaggaacttgaaacttataggcaaatgagtttgacagaa |
100 |
Q |
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| T |
2842866 |
agagatgaatattatgcaagagattcttataagaagggaaagggaaaatctttttttggaaaaggaacttgaaacttttaggcaaatgagtttgacagaa |
2842767 |
T |
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| Q |
101 |
agttgcgagttgcattcgaagtcagcagaggtgcggcttagtgaatggaaacgaagctcgccactttcatttgaaacatgtgatgatccatcacagatcg |
200 |
Q |
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| T |
2842766 |
agttgcgagttgcattcgaagtcagcagaggtgcggcttagtgaatggaaacgaagctcgccactttcatttgaaacatgtgatgatccatcacagatcg |
2842667 |
T |
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| Q |
201 |
aaagtactgtacctattgttaagcaagattgtacgaataatacagaacatgaagagttggataaaaacactgaatacaaggatcgagcatgtgatgattt |
300 |
Q |
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| T |
2842666 |
aaagtactgtacttattgttaagcaagattgtaccaataatacagaacatgaagagttggataaaaacactgaatacaaggatcgagcatgtgatgattt |
2842567 |
T |
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| Q |
301 |
gcatagctccttttatgatactgagtctga |
330 |
Q |
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| T |
2842566 |
gcatagctccttttatgatactgagtctga |
2842537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 2838765 - 2838683
Alignment:
| Q |
1 |
agagatgaatattatgcaagagatccttataagaagggaaagggagaatcnnnnnnnggaaaaggaacttgaaacttataggc |
83 |
Q |
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| T |
2838765 |
agagatgaatattatgcaagagattcttataagaagggaaaaggagaatctctttttggaaaaggaacttgaaagttataggc |
2838683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 330
Target Start/End: Complemental strand, 2838590 - 2838511
Alignment:
| Q |
251 |
gaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctga |
330 |
Q |
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| T |
2838590 |
gaagaggtggaggaaaacagtcaacacaaggatcaagcgtgcaatgatatgcatagatccttttatgatactgagtctga |
2838511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 2838679 - 2838645
Alignment:
| Q |
162 |
cactttcatttgaaacatgtgatgatccatcacag |
196 |
Q |
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| T |
2838679 |
cactttcatttgaaacttgtgatgatccatcacag |
2838645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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