View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6875A_low_77 (Length: 328)

Name: NF6875A_low_77
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6875A_low_77
NF6875A_low_77
[»] chr5 (18 HSPs)
chr5 (12-324)||(5042695-5043009)
chr5 (13-85)||(32732103-32732178)
chr5 (13-88)||(8442167-8442246)
chr5 (12-63)||(4173107-4173158)
chr5 (16-80)||(7080546-7080614)
chr5 (13-85)||(12203158-12203234)
chr5 (12-59)||(17990255-17990302)
chr5 (12-59)||(21023339-21023386)
chr5 (12-59)||(26660394-26660441)
chr5 (12-59)||(26931986-26932033)
chr5 (12-62)||(3031872-3031922)
chr5 (12-62)||(17574207-17574257)
chr5 (12-62)||(18729272-18729322)
chr5 (12-62)||(20985512-20985562)
chr5 (12-62)||(34698813-34698863)
chr5 (12-62)||(42364467-42364517)
chr5 (14-59)||(36713163-36713208)
chr5 (28-60)||(6292162-6292194)
[»] chr4 (23 HSPs)
chr4 (12-89)||(8614186-8614264)
chr4 (17-85)||(37731926-37731998)
chr4 (15-85)||(46686245-46686318)
chr4 (12-62)||(34537968-34538018)
chr4 (14-59)||(25725679-25725724)
chr4 (14-74)||(22893894-22893954)
chr4 (14-74)||(22945562-22945622)
chr4 (32-89)||(28899218-28899279)
chr4 (14-62)||(29863589-29863637)
chr4 (12-59)||(4514248-4514295)
chr4 (17-85)||(9827971-9828043)
chr4 (12-84)||(28676135-28676211)
chr4 (12-59)||(41170813-41170860)
chr4 (12-62)||(4577595-4577645)
chr4 (14-85)||(21766558-21766633)
chr4 (16-84)||(37380314-37380379)
chr4 (14-59)||(1031796-1031841)
chr4 (15-85)||(2109443-2109517)
chr4 (13-87)||(24310505-24310583)
chr4 (13-85)||(32294744-32294817)
chr4 (16-53)||(35588800-35588837)
chr4 (13-87)||(52851338-52851416)
chr4 (16-89)||(7795021-7795098)
[»] chr8 (27 HSPs)
chr8 (13-86)||(6243044-6243121)
chr8 (32-85)||(29107995-29108052)
chr8 (12-59)||(20683562-20683609)
chr8 (13-85)||(37471654-37471730)
chr8 (12-59)||(41703360-41703407)
chr8 (12-62)||(21649151-21649201)
chr8 (13-59)||(41304966-41305012)
chr8 (13-62)||(34883201-34883250)
chr8 (15-59)||(34186648-34186692)
chr8 (12-59)||(3756942-3756989)
chr8 (12-59)||(6161989-6162036)
chr8 (12-59)||(7325756-7325803)
chr8 (13-85)||(13924022-13924098)
chr8 (12-59)||(24946043-24946090)
chr8 (12-59)||(35818978-35819025)
chr8 (13-59)||(12490756-12490802)
chr8 (12-62)||(22836122-22836172)
chr8 (12-62)||(28156241-28156291)
chr8 (12-62)||(32674215-32674265)
chr8 (13-59)||(39021427-39021473)
chr8 (12-82)||(14710876-14710950)
chr8 (17-87)||(32777894-32777968)
chr8 (12-86)||(36675335-36675413)
chr8 (17-62)||(40459750-40459795)
chr8 (12-85)||(25430657-25430734)
chr8 (28-60)||(29028959-29028991)
chr8 (27-59)||(34490154-34490186)
[»] chr6 (16 HSPs)
chr6 (12-89)||(16121159-16121240)
chr6 (13-86)||(9395321-9395398)
chr6 (14-86)||(32135416-32135492)
chr6 (13-86)||(22422163-22422237)
chr6 (13-62)||(34976653-34976702)
chr6 (12-85)||(3179986-3180063)
chr6 (13-85)||(17442833-17442909)
chr6 (12-87)||(2163700-2163779)
chr6 (12-87)||(2175333-2175412)
chr6 (13-62)||(25995480-25995529)
chr6 (12-57)||(29173033-29173077)
chr6 (12-85)||(2165283-2165360)
chr6 (12-85)||(2176916-2176993)
chr6 (15-59)||(5080553-5080597)
chr6 (12-85)||(25561923-25562000)
chr6 (12-85)||(26101437-26101514)
[»] chr3 (32 HSPs)
chr3 (12-85)||(48490496-48490573)
chr3 (12-85)||(50745560-50745637)
chr3 (12-62)||(1261358-1261408)
chr3 (12-85)||(48117347-48117424)
chr3 (13-85)||(29057659-29057735)
chr3 (12-62)||(2935494-2935544)
chr3 (12-85)||(21481778-21481852)
chr3 (14-60)||(25806513-25806559)
chr3 (12-85)||(41957533-41957603)
chr3 (13-62)||(9557906-9557955)
chr3 (15-85)||(55361219-55361293)
chr3 (28-89)||(23868977-23869042)
chr3 (14-58)||(29533791-29533835)
chr3 (12-85)||(29846874-29846951)
chr3 (12-85)||(35368622-35368699)
chr3 (12-59)||(7294082-7294129)
chr3 (12-59)||(41717491-41717538)
chr3 (12-59)||(43333653-43333700)
chr3 (12-59)||(44334784-44334831)
chr3 (17-85)||(49361823-49361895)
chr3 (12-59)||(51672904-51672951)
chr3 (28-59)||(54195381-54195412)
chr3 (14-85)||(1765404-1765479)
chr3 (12-62)||(16295502-16295552)
chr3 (12-62)||(48205083-48205133)
chr3 (62-91)||(9311034-9311063)
chr3 (13-62)||(33074912-33074961)
chr3 (13-62)||(36301192-36301241)
chr3 (13-62)||(38471680-38471729)
chr3 (12-53)||(44910744-44910785)
chr3 (14-59)||(45293013-45293058)
chr3 (15-86)||(32205606-32205680)
[»] chr1 (32 HSPs)
chr1 (12-89)||(40139122-40139203)
chr1 (12-62)||(11038300-11038350)
chr1 (14-85)||(43757599-43757674)
chr1 (12-85)||(37741935-37742012)
chr1 (15-87)||(16252745-16252821)
chr1 (15-62)||(22674750-22674797)
chr1 (13-85)||(48256920-48256994)
chr1 (12-86)||(48689569-48689644)
chr1 (12-62)||(2827693-2827743)
chr1 (12-62)||(6396365-6396415)
chr1 (12-62)||(40240094-40240144)
chr1 (15-85)||(46903481-46903555)
chr1 (14-88)||(5477148-5477226)
chr1 (12-85)||(11121492-11121569)
chr1 (14-62)||(11897212-11897260)
chr1 (12-87)||(16836097-16836177)
chr1 (13-85)||(21446202-21446278)
chr1 (13-85)||(27687503-27687579)
chr1 (12-59)||(33422202-33422249)
chr1 (12-59)||(44112495-44112542)
chr1 (12-59)||(44641886-44641933)
chr1 (12-84)||(50460695-50460771)
chr1 (13-59)||(30530558-30530604)
chr1 (29-59)||(37117866-37117896)
chr1 (13-59)||(52417572-52417618)
chr1 (13-62)||(27787527-27787576)
chr1 (15-59)||(15059681-15059725)
chr1 (15-59)||(21433386-21433430)
chr1 (12-85)||(30414875-30414952)
chr1 (12-85)||(40596037-40596114)
chr1 (15-59)||(52267245-52267289)
chr1 (15-59)||(52576288-52576332)
[»] chr7 (26 HSPs)
chr7 (12-88)||(25272599-25272679)
chr7 (13-89)||(37848604-37848684)
chr7 (12-87)||(27866520-27866599)
chr7 (12-62)||(38197699-38197749)
chr7 (12-62)||(45335900-45335950)
chr7 (15-59)||(5198743-5198787)
chr7 (12-85)||(34992318-34992395)
chr7 (12-59)||(155964-156011)
chr7 (17-85)||(5905953-5906025)
chr7 (12-59)||(10591196-10591243)
chr7 (15-62)||(28548207-28548254)
chr7 (15-62)||(37969969-37970016)
chr7 (15-62)||(41458886-41458933)
chr7 (12-59)||(47644746-47644793)
chr7 (17-88)||(33465027-33465102)
chr7 (12-62)||(44511177-44511227)
chr7 (26-59)||(5174548-5174581)
chr7 (13-62)||(17039195-17039244)
chr7 (12-85)||(6822516-6822593)
chr7 (12-85)||(26041321-26041398)
chr7 (17-82)||(29923685-29923754)
chr7 (12-60)||(30391188-30391236)
chr7 (13-57)||(36108215-36108259)
chr7 (12-60)||(40108164-40108212)
chr7 (31-85)||(41985102-41985160)
chr7 (12-85)||(49142500-49142577)
[»] chr2 (40 HSPs)
chr2 (12-86)||(23141366-23141441)
chr2 (12-86)||(23553156-23553231)
chr2 (12-87)||(24727424-24727503)
chr2 (13-62)||(11728105-11728154)
chr2 (16-89)||(27538903-27538980)
chr2 (13-85)||(27329093-27329169)
chr2 (14-61)||(37827770-37827817)
chr2 (12-62)||(12208480-12208530)
chr2 (12-62)||(27529567-27529617)
chr2 (12-62)||(30340031-30340081)
chr2 (12-85)||(43205107-43205181)
chr2 (13-62)||(40721809-40721858)
chr2 (12-60)||(1277771-1277819)
chr2 (12-85)||(13881106-13881183)
chr2 (12-85)||(14021231-14021308)
chr2 (14-62)||(18749348-18749396)
chr2 (14-62)||(20247852-20247900)
chr2 (12-85)||(22296112-22296189)
chr2 (12-59)||(546368-546415)
chr2 (12-59)||(5455436-5455483)
chr2 (15-62)||(34373043-34373090)
chr2 (12-59)||(43725246-43725293)
chr2 (12-62)||(19523384-19523434)
chr2 (18-60)||(32128172-32128214)
chr2 (12-62)||(35203732-35203782)
chr2 (13-62)||(6328705-6328754)
chr2 (17-62)||(17999784-17999829)
chr2 (13-62)||(19637267-19637316)
chr2 (13-62)||(19835860-19835909)
chr2 (12-61)||(26387842-26387891)
chr2 (13-85)||(35008085-35008158)
chr2 (12-86)||(45202115-45202193)
chr2 (15-55)||(3585671-3585711)
chr2 (12-60)||(4723606-4723654)
chr2 (12-56)||(6666064-6666108)
chr2 (12-52)||(10749662-10749702)
chr2 (12-85)||(22353158-22353235)
chr2 (12-60)||(35705900-35705948)
chr2 (28-60)||(36644078-36644110)
chr2 (15-86)||(37737963-37738037)
[»] scaffold0119 (1 HSPs)
scaffold0119 (12-60)||(23272-23320)
[»] scaffold0286 (2 HSPs)
scaffold0286 (12-87)||(18630-18709)
scaffold0286 (12-85)||(17049-17126)
[»] scaffold0054 (1 HSPs)
scaffold0054 (12-85)||(31583-31660)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 5043009 - 5042695
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtacatgattgtacaaatatcatttctcatatcaaagtaaaaaatacggtgttg 111  Q
    |||||||| ||||||| || ||||||||||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5043009 ggaagagaaagaatatgaagataatgtgagtataagagagaaacgtgtacatgattgtataaatatcatttctcatatcaaagtaaaaaatacggtgttg 5042910  T
Q  112 annnnnnnnnnnnngtttaattatctagctgtaaatccatgtccgtttgtgtgagcttgtcactcacatcagatatagtaaaacttattctatttgtggt 211  Q
    |             ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5042909 atttttacttttttgtttaattatctagctgtaaatccatgtctgtttgtgtgagcttgtcactcacatcagatatagtaaaacttattctatttgtggt 5042810  T
Q  212 tctaatgcttaataattgtcttctcatattacatggtaaatgatttttgaaag--nnnnnnnnnnttcagatctccccagagtgtgagagttctgcaatc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||| || ||||||||||||||||||||||    
T  5042809 tctaatgcttaataattgtcttctcatattacatggtaaatgatttttgaaagaaaaaaaaagtattcagatcttccgagagtgtgagagttctgcaatc 5042710  T
Q  310 atgtattgaatattg 324  Q
    |||||||||||||||    
T  5042709 atgtattgaatattg 5042695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 32732103 - 32732178
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||||||| ||||| ||||||||||| | ||||||||||||||    |||||||||||||||| |||||||    
T  32732103 gaagagagagaataaaaaaa-aatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatataatttctc 32732178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 8442246 - 8442167
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctcata 88  Q
    ||||||||| |||| ||| ||||||||| ||| | ||||||||||||||    || ||||||||||||||||||||||||    
T  8442246 gaagagagaaaataaaaagataatgtgaatatgagagagaaagttgtacaaaaataattgtacaaatatcatttctcata 8442167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 4173107 - 4173158
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtacat 63  Q
    |||| |||||||||| ||||||||||| ||||| | ||||||||||||||||    
T  4173107 ggaatagagagaataaaaaaataatgtaagtatgagagagaaagttgtacat 4173158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 7080614 - 7080546
Alignment:
Q  16 gagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcat 80  Q
    |||||||||||  || ||||||||||||| | ||||||||||||||    |||||||||||||||||||    
T  7080614 gagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatatcat 7080546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 12203234 - 12203158
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    ||||||||||||||  || |||||||||| || | ||||||||||||||    ||| ||||||||||||||||||||    
T  12203234 gaagagagagaataagaagataatgtgagcatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 12203158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 17990302 - 17990255
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  17990302 ggaagagagagaataaaaacataatgtgagtatgagagagaaagttgt 17990255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 21023386 - 21023339
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    |||||||||||||||  |||||||||||||||| | ||||||||||||    
T  21023386 ggaagagagagaataagaaaataatgtgagtatgagagagaaagttgt 21023339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 26660394 - 26660441
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  26660394 ggaagagagagaataaaaatataatgtgagtatgagagagaaagttgt 26660441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 26931986 - 26932033
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  26931986 ggaagagagagaataaaaatataatgtgagtatgagagagaaagttgt 26932033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 3031922 - 3031872
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||| ||||||||  || ||||||||||||| |||||||||||||||||    
T  3031922 ggaagaaagagaataagaagataatgtgagtatgaaagagaaagttgtaca 3031872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 17574207 - 17574257
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||| ||||||||| ||| ||||||||||||| | |||||||||||||||    
T  17574207 ggaagcgagagaataaaaagataatgtgagtatgagagagaaagttgtaca 17574257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 18729272 - 18729322
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||||  || ||||||||||||| |||||||| ||||||||    
T  18729272 ggaagagagagaataagaagataatgtgagtatgaaagagaaggttgtaca 18729322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 20985512 - 20985562
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||||  || ||||||||||||| | |||||||||||||||    
T  20985512 ggaagagagagaataagaagataatgtgagtatgagagagaaagttgtaca 20985562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 34698863 - 34698813
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||| |||||||| ||| |||| |||||||| |||||||||||||||||    
T  34698863 ggaagaaagagaataaaaacataaagtgagtatgaaagagaaagttgtaca 34698813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 42364517 - 42364467
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||||| ||| |||||| |||||| | |||||||||||||||    
T  42364517 ggaagagagagaataaaaagataatgcgagtatgagagagaaagttgtaca 42364467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 36713163 - 36713208
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  36713163 aagagagagaataaaaatataatgtgagtatgagagagaaagttgt 36713208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 6292194 - 6292162
Alignment:
Q  28 aaaaataatgtgagtataaaagagaaagttgta 60  Q
    ||||||||||||||||||| |||||||||||||    
T  6292194 aaaaataatgtgagtataagagagaaagttgta 6292162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 8614264 - 8614186
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtacatga-ttgtacaaatatcatttctcatat 89  Q
    |||||||||||||||  |||||||||||||||| | |||||| ||||||||  | ||||||||||||||||||||||||    
T  8614264 ggaagagagagaataagaaaataatgtgagtatgagagagaaggttgtacaaaagttgtacaaatatcatttctcatat 8614186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 37731998 - 37731926
Alignment:
Q  17 agagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||| ||| ||||||||||||| | ||||||||||||||    ||||||||||||||||||||||||    
T  37731998 agagagaataaaaacataatgtgagtatgagagagaaagttgtaccaaaatgattgtacaaatatcatttctc 37731926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 46686318 - 46686245
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgtac---atgattgtacaaatatcatttctc 85  Q
    ||||| |||||| ||| ||||||||||||| | ||||||||||||||   ||| ||||||||||||||||||||    
T  46686318 agagatagaataaaaacataatgtgagtatgagagagaaagttgtacaaaatggttgtacaaatatcatttctc 46686245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 34538018 - 34537968
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||||| ||| ||||||||||||| | |||||||||||||||    
T  34538018 ggaagagagagaataaaaacataatgtgagtatgagagagaaagttgtaca 34537968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 25725679 - 25725724
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  25725679 aagagagagaataaaaacataatgtgagtatgaaagagaaagttgt 25725724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 22893954 - 22893894
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgtacatgattgtacaaa 74  Q
    |||||||||||||  || ||||||||||||| ||||||||||||||| |  ||||||||||    
T  22893954 aagagagagaataagaagataatgtgagtatgaaagagaaagttgtaaaaaattgtacaaa 22893894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 22945622 - 22945562
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgtacatgattgtacaaa 74  Q
    |||||||||||||  || ||||||||||||| ||||||||||||||| |  ||||||||||    
T  22945622 aagagagagaataagaagataatgtgagtatgaaagagaaagttgtaaaaaattgtacaaa 22945562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 28899218 - 28899279
Alignment:
Q  32 ataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctcatat 89  Q
    ||||||||| ||| | ||||||||||||||    ||||||||||||||||||||||||||||    
T  28899218 ataatgtgaatatgagagagaaagttgtaccaaaatgattgtacaaatatcatttctcatat 28899279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 29863637 - 29863589
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||| ||| ||||||| ||||| |||||||||||||||||    
T  29863637 aagagagagaataaaaatataatgtaagtatgaaagagaaagttgtaca 29863589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 4514248 - 4514295
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    |||||||||||||||| || ||||||||||||| | ||||||||||||    
T  4514248 ggaagagagagaatatgaatataatgtgagtatgagagagaaagttgt 4514295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 9827971 - 9828043
Alignment:
Q  17 agagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||| ||| ||||||||||| | | ||||||||||||||    ||| ||||||||||||||||||||    
T  9827971 agagagaataaaaacataatgtgagtgtgagagagaaagttgtactaaaatggttgtacaaatatcatttctc 9828043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 28676135 - 28676211
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttct 84  Q
    |||||||||||| ||  || ||||||||||||| ||||||||||||||    | ||| |||||||||||||||||||    
T  28676135 ggaagagagagagtaagaatataatgtgagtatgaaagagaaagttgtcacaaaatggttgtacaaatatcatttct 28676211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 41170860 - 41170813
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  41170860 ggaagagagagaataaaaatataatgtgagtatgagagagaaagttgt 41170813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 4577645 - 4577595
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||||  || ||||||||||||| | |||||||||||||||    
T  4577645 ggaagagagagaataagaagataatgtgagtatgagagagaaagttgtaca 4577595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 21766633 - 21766558
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||||||  || ||||||||||||| | |||||| |||||||    |||||| |||||||||||||||||    
T  21766633 aagagagagaataagaagataatgtgagtatgagagagaaggttgtacaaaaatgattatacaaatatcatttctc 21766558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 37380314 - 37380379
Alignment:
Q  16 gagagagaatataaaaataatgtgagtataaaagagaaagttgtacatgattgtacaaatatcatttct 84  Q
    |||||||||||  || |||| |||||||| ||||||||||||||||    |||||||||||||||||||    
T  37380314 gagagagaataagaagataacgtgagtatgaaagagaaagttgtac---gttgtacaaatatcatttct 37380379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 1031841 - 1031796
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  1031841 aagagagagaataaaaacataatgtgagtatgagagagaaagttgt 1031796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 2109517 - 2109443
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctc 85  Q
    ||||||| | || ||| ||||||||||||| ||||||||||||||    | ||| ||||||||||||||||||||    
T  2109517 agagagaaagtaaaaacataatgtgagtatgaaagagaaagttgtcaaaagatggttgtacaaatatcatttctc 2109443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 24310505 - 24310583
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctcat 87  Q
    ||||||||| ||||  || | ||||||||||| | ||||||||||||||    ||| ||||||||||||||||||||||    
T  24310505 gaagagagaaaataagaagaaaatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctcat 24310583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 32294744 - 32294817
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtacatga-ttgtacaaatatcatttctc 85  Q
    ||||||||||||||  || ||||||||||||| | |||||| ||||||||  | || |||||||||||||||||    
T  32294744 gaagagagagaataagaagataatgtgagtatgagagagaaggttgtacaaaagttatacaaatatcatttctc 32294817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 35588837 - 35588800
Alignment:
Q  16 gagagagaatataaaaataatgtgagtataaaagagaa 53  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  35588837 gagagagaaaataaaaataatgtgagtatgaaagagaa 35588800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 52851416 - 52851338
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctcat 87  Q
    |||||||||||||| ||| |||||||||||||   ||||||||||||    | ||| |||| |||||||||||||||||    
T  52851416 gaagagagagaataaaaatataatgtgagtatgtgagagaaagttgtcatgaaatggttgtgcaaatatcatttctcat 52851338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 7795098 - 7795021
Alignment:
Q  16 gagagagaatataaaaataatgtgagtataaaagagaaagttgtaca----tgattgtacaaatatcatttctcatat 89  Q
    |||||||||||  || ||||||| ||||| | | |||||||||||||    || ||||||||||||||||||||||||    
T  7795098 gagagagaataagaagataatgtaagtatgagaaagaaagttgtacaaaaatggttgtacaaatatcatttctcatat 7795021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 6243121 - 6243044
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctca 86  Q
    ||||||||||||||  || ||||||||||||| | ||||||||||||||    |||||||||||||||||||||||||    
T  6243121 gaagagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatatcatttctca 6243044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 29108052 - 29107995
Alignment:
Q  32 ataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctc 85  Q
    ||||||||||||||||||||||||||||    | ||||||||||||||||||||||||    
T  29108052 ataatgtgagtataaaagagaaagttgttaaaaaatgattgtacaaatatcatttctc 29107995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 20683609 - 20683562
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  20683609 ggaagagagagaataaaaatataatgtgagtataagagagaaagttgt 20683562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 37471730 - 37471654
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    ||||||||||||||  || ||||||||||||  | ||||||||||||||    ||||||||||||||||||||||||    
T  37471730 gaagagagagaataagaagataatgtgagtacgagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 37471654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 41703407 - 41703360
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    |||||||||| |||| || |||||||||||||||||||||||||||||    
T  41703407 ggaagagagataataaaagaataatgtgagtataaaagagaaagttgt 41703360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 21649151 - 21649201
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||||  || ||||||||||||| |||||||||||||||||    
T  21649151 ggaagagagagaataggaagataatgtgagtatgaaagagaaagttgtaca 21649201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 41304966 - 41305012
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  41304966 gaagagagagaataaaaatataatgtgagtataagagagaaagttgt 41305012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 34883250 - 34883201
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||| ||||  |||||||||||||||||| |||||||||||||||    
T  34883250 gaagagagaaaataagaaaataatgtgagtataagagagaaagttgtaca 34883201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 34186692 - 34186648
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||| |||| ||| ||||||||||||||||||||||||||||    
T  34186692 agagagaaaataaaaagataatgtgagtataaaagagaaagttgt 34186648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 3756989 - 3756942
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||| ||||||| ||||||||||||||    
T  3756989 ggaagagagagaataaaaatataatatgagtatgaaagagaaagttgt 3756942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 6162036 - 6161989
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| ||||||| ||||||    
T  6162036 ggaagagagagaataaaaacataatgtgagtatgaaagagagagttgt 6161989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 7325803 - 7325756
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  7325803 ggaagagagagaataaaaacataatgtgagtatgagagagaaagttgt 7325756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 13924098 - 13924022
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    ||||||||||||||  || |||||||||| || | ||||||||||||||    ||| ||||||||||||||||||||    
T  13924098 gaagagagagaataagaagataatgtgagcatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 13924022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 24946090 - 24946043
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  24946090 ggaagagagagaataaaaacataatgtgagtatgagagagaaagttgt 24946043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 35819025 - 35818978
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  35819025 ggaagagagagaataaaaagataatgtgagtatgagagagaaagttgt 35818978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 12490756 - 12490802
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    |||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  12490756 gaagagagagaataaaaacataatgtgagtatgagagagaaagttgt 12490802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 22836122 - 22836172
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||||  || ||||||||||||| | |||||||||||||||    
T  22836122 ggaagagagagaataagaagataatgtgagtatgagagagaaagttgtaca 22836172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 28156291 - 28156241
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||||| ||| ||||||| ||||| | |||||||||||||||    
T  28156291 ggaagagagagaataaaaacataatgtaagtatgagagagaaagttgtaca 28156241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 32674215 - 32674265
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||| |||||||| ||| ||||||||||||| | |||||||||||||||    
T  32674215 ggaagatagagaataaaaacataatgtgagtatgagagagaaagttgtaca 32674265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 39021427 - 39021473
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    |||||||||||||| ||| ||||||||||||| ||||||| ||||||    
T  39021427 gaagagagagaataaaaacataatgtgagtatgaaagagagagttgt 39021473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 14710876 - 14710950
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcattt 82  Q
    |||||||| |||||| ||  ||||||||||||| | ||||||||||||    | |||||||||||||||||||||    
T  14710876 ggaagagatagaataaaagtataatgtgagtatgagagagaaagttgtcacaaaatgattgtacaaatatcattt 14710950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 32777968 - 32777894
Alignment:
Q  17 agagagaatataaaaataatgtgagtataaaagagaaagttgtaca----tgattgtacaaatatcatttctcat 87  Q
    ||||||||||  || ||||||||||||||| ||||||||||||| |    || ||||||| ||||||||||||||    
T  32777968 agagagaataagaagataatgtgagtataagagagaaagttgtataaaaatggttgtacagatatcatttctcat 32777894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 36675413 - 36675335
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctca 86  Q
    |||||||||||||||  || ||||| ||||||| | ||| ||||||||||    ||| |||||||||||||||||||||    
T  36675413 ggaagagagagaataataacataatatgagtatgagagaaaaagttgtacaaaaatggttgtacaaatatcatttctca 36675335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 40459750 - 40459795
Alignment:
Q  17 agagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||| ||| ||||||||||||| | |||||||||||||||    
T  40459750 agagagaataaaaatataatgtgagtatgagagagaaagttgtaca 40459795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 25430734 - 25430657
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||||||||  || ||||||||||||| | | |||| |||||||    ||| ||||||||||||||||||||    
T  25430734 ggaagagagagaataagaagataatgtgagtatgagatagaaggttgtacaaaaatggttgtacaaatatcatttctc 25430657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 29028959 - 29028991
Alignment:
Q  28 aaaaataatgtgagtataaaagagaaagttgta 60  Q
    ||||||||||||||||||| |||||||||||||    
T  29028959 aaaaataatgtgagtataagagagaaagttgta 29028991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 34490154 - 34490186
Alignment:
Q  27 taaaaataatgtgagtataaaagagaaagttgt 59  Q
    |||||||||||||||||||| ||||||||||||    
T  34490154 taaaaataatgtgagtataagagagaaagttgt 34490186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 16121240 - 16121159
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctcatat 89  Q
    |||||||||||||||  || ||||||| ||||| ||||||||||||||||    ||| ||||||||||||||||||||||||    
T  16121240 ggaagagagagaataagaagataatgtaagtatgaaagagaaagttgtacaaaaatggttgtacaaatatcatttctcatat 16121159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 9395321 - 9395398
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctca 86  Q
    ||||||||||||||  || ||||||||||||| ||||||||||||||||    ||  |||||||||||||||||||||    
T  9395321 gaagagagagaataagaagataatgtgagtatgaaagagaaagttgtacaaaaatagttgtacaaatatcatttctca 9395398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 32135416 - 32135492
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctca 86  Q
    ||||| |||||||  || ||||||||||||| | ||||||||||||||    |||||||||||||||||||||||||    
T  32135416 aagagggagaataagaagataatgtgagtatgatagagaaagttgtacaaaaatgattgtacaaatatcatttctca 32135492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 22422237 - 22422163
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtacatga-ttgtacaaatatcatttctca 86  Q
    ||||||||||||||  || ||||||||||||| | |||||||||||||||  | ||||||||||| |||||||||    
T  22422237 gaagagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaagttgtacaaataacatttctca 22422163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 34976702 - 34976653
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||| ||| |||| |||||||||| |||||||||||||||    
T  34976702 gaagagagagaataaaaatataaggtgagtataagagagaaagttgtaca 34976653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 3179986 - 3180063
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctc 85  Q
    ||||||||||||||| ||  ||||||||| ||||| ||| ||||||||    | ||||||||||||||||||||||||    
T  3179986 ggaagagagagaataaaatgataatgtgaatataagagataaagttgtcaaaaaatgattgtacaaatatcatttctc 3180063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 17442909 - 17442833
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    ||||||||| ||||  || ||||||||||||||| ||||||||||||||    ||| |||||||||||| |||||||    
T  17442909 gaagagagataataagaagataatgtgagtataagagagaaagttgtacaaaaatggttgtacaaatattatttctc 17442833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 2163779 - 2163700
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt-aca---tgattgtacaaatatcatttctcat 87  Q
    ||||||||||||||| ||  ||||||| ||||| | ||||||| |||| |||   |||||||||||||||||||||||||    
T  2163779 ggaagagagagaataaaaggataatgtaagtatgagagagaaaattgtcacaaattgattgtacaaatatcatttctcat 2163700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 2175412 - 2175333
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt-aca---tgattgtacaaatatcatttctcat 87  Q
    ||||||||||||||| ||  ||||||| ||||| | ||||||| |||| |||   |||||||||||||||||||||||||    
T  2175412 ggaagagagagaataaaaggataatgtaagtatgagagagaaaattgtcacaaattgattgtacaaatatcatttctcat 2175333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 25995529 - 25995480
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||| ||  ||||||||||||| | |||||||||||||||    
T  25995529 gaagagagagaataaaattataatgtgagtatgagagagaaagttgtaca 25995480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 29173077 - 29173033
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagtt 57  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  29173077 ggaagagagagaata-aaaaataatgtgagtatgaaaaagaaagtt 29173033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 2165283 - 2165360
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||||||||  || |||||| |||||| | ||| ||||||||||    ||| ||||||||||||||||||||    
T  2165283 ggaagagagagaataagaagataatgcgagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctc 2165360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 2176916 - 2176993
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||||||||  || |||||| |||||| | ||| ||||||||||    ||| ||||||||||||||||||||    
T  2176916 ggaagagagagaataagaagataatgcgagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctc 2176993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 5080553 - 5080597
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||| | || ||||||||||||||||| ||||||||||||||    
T  5080553 agagagaaagtaaaaaaataatgtgagtatgaaagagaaagttgt 5080597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 25561923 - 25562000
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctc 85  Q
    |||||||||||||||  || ||||||||||||| | ||| ||||||||    | |||||||||| |||||||||||||    
T  25561923 ggaagagagagaataagaagataatgtgagtatgagagataaagttgtataaaaatgattgtacgaatatcatttctc 25562000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 26101437 - 26101514
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctc 85  Q
    |||||||||||||||  || ||||||||||||| | ||| ||||||||    | |||||||||| |||||||||||||    
T  26101437 ggaagagagagaataagaagataatgtgagtatgagagataaagttgtataaaaatgattgtacgaatatcatttctc 26101514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 48490496 - 48490573
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca----tgattgtacaaatatcatttctc 85  Q
    ||||||||||||||| ||| ||||||||||||| | |||||||||||||||    || ||||||||||||||||||||    
T  48490496 ggaagagagagaataaaaagataatgtgagtatgagagagaaagttgtacaaaagtggttgtacaaatatcatttctc 48490573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 50745637 - 50745560
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||||||||  || ||||||||||||| | ||||||||||||||    ||||||||||||||||||||||||    
T  50745637 ggaagagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 50745560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 1261358 - 1261408
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  1261358 ggaagagagagaataaaaacataatgtgagtatgaaagagaaagttgtaca 1261408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 48117424 - 48117347
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    ||||||||||||||  ||| ||||||||||||| ||||||||||||||||    ||| ||||| ||||||||||||||    
T  48117424 ggaagagagagaatggaaagataatgtgagtatgaaagagaaagttgtacaaaaatggttgtataaatatcatttctc 48117347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 29057735 - 29057659
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    ||||||||||||||  || ||||||||||||| | ||||||||||||||    ||| ||||||||||||||||||||    
T  29057735 gaagagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 29057659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 2935494 - 2935544
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||||  || ||||||||||||| |||||||||||||||||    
T  2935494 ggaagagagagaataagaagataatgtgagtatgaaagagaaagttgtaca 2935544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 21481852 - 21481778
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtacatga-ttgtacaaatatcatttctc 85  Q
    |||||||||||||||  || ||||||||||||| | ||| |||||||||||  | ||||||||||||||||||||    
T  21481852 ggaagagagagaataagaagataatgtgagtatgagagaaaaagttgtacaaaagttgtacaaatatcatttctc 21481778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 25806513 - 25806559
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgta 60  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||||||    
T  25806513 aagagagagaataaaaacataatgtgagtataagagagaaagttgta 25806559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 41957603 - 41957533
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtacatgattgtacaaatatcatttctc 85  Q
    ||||||||||||||| ||| ||||||||||||| ||||| |||||||| ||   ||||||||||||||||||||    
T  41957603 ggaagagagagaataaaaacataatgtgagtatgaaagataaagttgt-ca--gttgtacaaatatcatttctc 41957533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 9557906 - 9557955
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||| ||| ||||||||||||| | |||||||||||||||    
T  9557906 gaagagagagaataaaaacataatgtgagtatgagagagaaagttgtaca 9557955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 55361219 - 55361293
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctc 85  Q
    ||||||| | || ||||||||||||||||||| ||||||||||||    | ||| ||||||||||||||||||||    
T  55361219 agagagaaagtaaaaaaataatgtgagtataagagagaaagttgtcaagaaatggttgtacaaatatcatttctc 55361293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 23868977 - 23869042
Alignment:
Q  28 aaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctcatat 89  Q
    ||||||||||||||||| ||||||||| ||||    | ||| ||||||||||||||||||||||||    
T  23868977 aaaaataatgtgagtatgaaagagaaaattgttataaaatggttgtacaaatatcatttctcatat 23869042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 29533835 - 29533791
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttg 58  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||||    
T  29533835 aagagagagaataaaaacataatgtaagtataaaagagaaagttg 29533791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 29846874 - 29846951
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||| ||||||||  || ||||||||||||| | ||||||||||||||    ||| ||||||||||||||||||||    
T  29846874 ggaagaaagagaataagaatataatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 29846951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 35368699 - 35368622
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||||||||  || ||||||||||||| | ||||||||||||||    ||  ||||||||||||||||||||    
T  35368699 ggaagagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaaatagttgtacaaatatcatttctc 35368622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 7294082 - 7294129
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  7294082 ggaagagagagaataaaaacataatgtgagtatgagagagaaagttgt 7294129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 41717538 - 41717491
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| ||||||| ||||||    
T  41717538 ggaagagagagaataaaaacataatgtgagtatgaaagagagagttgt 41717491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 43333653 - 43333700
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| ||||||| ||||||    
T  43333653 ggaagagagagaataaaaatataatgtgagtatgaaagagagagttgt 43333700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 44334784 - 44334831
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  44334784 ggaagagagagaataaaaatataatgtgagtatgagagagaaagttgt 44334831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 49361823 - 49361895
Alignment:
Q  17 agagagaatataaaaataatgtgagtataaaagagaaagttgtaca----tgattgtacaaatatcatttctc 85  Q
    ||||||||||  || ||||||||||||| | ||| |||||||||||    |||||||||||||||||||||||    
T  49361823 agagagaataagaagataatgtgagtatgagagaaaaagttgtacaaaaatgattgtacaaatatcatttctc 49361895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 51672951 - 51672904
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| ||| ||||||||||    
T  51672951 ggaagagagagaataaaaatataatgtgagtatgaaaaagaaagttgt 51672904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 54195412 - 54195381
Alignment:
Q  28 aaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||||||||||||||||||||    
T  54195412 aaaaataatgtgagtataaaagagaaagttgt 54195381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 1765479 - 1765404
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctc 85  Q
    ||||||||||||| ||| |||||||| |||| | ||||||||||||    | |||| |||||||||||||||||||    
T  1765479 aagagagagaataaaaacataatgtgcgtatgagagagaaagttgtcacaaaatgaatgtacaaatatcatttctc 1765404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 16295552 - 16295502
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||| |||| ||| ||||||||||||| | |||||||||||||||    
T  16295552 ggaagagagaaaataaaaatataatgtgagtatgagagagaaagttgtaca 16295502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 48205133 - 48205083
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||| |||||||    
T  48205133 ggaagagagagaataaaaagataatgtgagtatgagagagaaaattgtaca 48205083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 91
Target Start/End: Complemental strand, 9311063 - 9311034
Alignment:
Q  62 atgattgtacaaatatcatttctcatatca 91  Q
    ||||||||||||||||||||||||||||||    
T  9311063 atgattgtacaaatatcatttctcatatca 9311034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 33074961 - 33074912
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||| ||| ||||||||||||| | ||| |||||||||||    
T  33074961 gaagagagagaataaaaatataatgtgagtatgagagaaaaagttgtaca 33074912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 36301192 - 36301241
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||| ||| |||||||||| || | |||||||||||||||    
T  36301192 gaagagagagaataaaaacataatgtgagcatgagagagaaagttgtaca 36301241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 38471729 - 38471680
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||| ||| ||||||||||||| | ||||||| |||||||    
T  38471729 gaagagagagaataaaaacataatgtgagtatgagagagaaaattgtaca 38471680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 44910785 - 44910744
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaa 53  Q
    ||||||||||||||||||| ||||||||||||| | ||||||    
T  44910785 ggaagagagagaatataaagataatgtgagtatgagagagaa 44910744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 45293013 - 45293058
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  45293013 aagagagagaataaaaatataatgtgagtatgagagagaaagttgt 45293058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 32205680 - 32205606
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgta---catgattgtacaaatatcatttctca 86  Q
    ||||||| |||| ||| |||||||| |||| | ||| |||||||||   ||||||||| ||||||||||||||||    
T  32205680 agagagaaaataaaaagataatgtgggtatgagagataaagttgtaaaacatgattgttcaaatatcatttctca 32205606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 40139203 - 40139122
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctcatat 89  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    | ||| ||||||||||||||||||||||||    
T  40139203 ggaagagagagaataaaaatataatgtgagtatgagagagaaagttgtcataaaatggttgtacaaatatcatttctcatat 40139122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 11038350 - 11038300
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  11038350 ggaagagagagaataaaaacataatgtgagtatgaaagagaaagttgtaca 11038300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 43757674 - 43757599
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||||     ||| ||||||||||||||||||||    
T  43757674 aagagagagaataaaaacataatgtgagtatgaaagagaaagttgtatcaaaatggttgtacaaatatcatttctc 43757599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 37741935 - 37742012
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    ||||||||||||||| ||| ||||||| ||||| |||||||||||||||     ||||||||||||||||||| ||||    
T  37741935 ggaagagagagaataaaaacataatgtaagtatgaaagagaaagttgtatcaaaatgattgtacaaatatcatctctc 37742012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 16252745 - 16252821
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctcat 87  Q
    ||||| ||||||  || ||||||||||||| ||||||||||||||||    ||| ||||||||||||||||||||||    
T  16252745 agagaaagaataggaagataatgtgagtatgaaagagaaagttgtacaaaaatggttgtacaaatatcatttctcat 16252821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 22674797 - 22674750
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||| |||||||||||||||| | |||||||||||||||    
T  22674797 agagagagaatatgaaaataatgtgagtatgagagagaaagttgtaca 22674750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 48256994 - 48256920
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac--atgattgtacaaatatcatttctc 85  Q
    ||||||||||||||  || ||||||||| ||| | ||||||||||||||  ||| ||||||||||||||||||||    
T  48256994 gaagagagagaataagaagataatgtgaatatgagagagaaagttgtacaaatggttgtacaaatatcatttctc 48256920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 48689644 - 48689569
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtacatga-ttgtacaaatatcatttctca 86  Q
    |||||||||||||||| || ||||||||||||| | ||||||| || ||||  | |||||||||||||||||||||    
T  48689644 ggaagagagagaatatgaagataatgtgagtatgagagagaaaattatacaaaagttgtacaaatatcatttctca 48689569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 2827693 - 2827743
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||||| ||| ||||||||||||| | |||||||||||||||    
T  2827693 ggaagagagagaataaaaacataatgtgagtatgagagagaaagttgtaca 2827743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 6396415 - 6396365
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||||| ||| | ||||||||||| |||||||||||||||||    
T  6396415 ggaagagagagaataaaaacacaatgtgagtatgaaagagaaagttgtaca 6396365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 40240094 - 40240144
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||| ||||||||||| || ||||||||||||| |||||||||||||||||    
T  40240094 ggaaaagagagaatatgaagataatgtgagtatgaaagagaaagttgtaca 40240144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 46903555 - 46903481
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||||| ||| ||||||||||||| | |||||||||||||     ||| ||||||||||||||||||||    
T  46903555 agagagagaataaaaacataatgtgagtatgagagagaaagttgtatcaaaatggttgtacaaatatcatttctc 46903481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 5477148 - 5477226
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgt-aca---tgattgtacaaatatcatttctcata 88  Q
    ||||||||||||| || |||||||||||||| | |||||||||||| |||   || ||||||||||||||||| |||||    
T  5477148 aagagagagaataaaagaataatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttatcata 5477226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 11121569 - 11121492
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca----tgattgtacaaatatcatttctc 85  Q
    |||||||||||||||  || ||||||||||||| | |||||||||||||||    |  ||||||||||||||||||||    
T  11121569 ggaagagagagaataagaagataatgtgagtatgagagagaaagttgtacaaaagttgttgtacaaatatcatttctc 11121492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 11897260 - 11897212
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||| ||| ||||||||||||| | |||||||||||||||    
T  11897260 aagagagagaataaaaacataatgtgagtatgagagagaaagttgtaca 11897212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 16836097 - 16836177
Alignment:
Q  12 ggaagagagagaatataaaa-ataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctcat 87  Q
    ||||||||||||||  |||| ||||||||||||| | ||| ||||||||    | ||||||||||||||||||||||||||    
T  16836097 ggaagagagagaattaaaaacataatgtgagtatgagagaaaaagttgtcacaaaatgattgtacaaatatcatttctcat 16836177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 21446202 - 21446278
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||  ||||| ||| ||||||||||||| | ||||||||||||||    ||||||||| ||||||||||||||    
T  21446202 gaagagaaggaataaaaatataatgtgagtatgagagagaaagttgtactaaaatgattgtataaatatcatttctc 21446278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 27687503 - 27687579
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctc 85  Q
    |||||||||||||| ||| ||||||||||||| | ||| ||||||||    | ||| ||||||||||||||||||||    
T  27687503 gaagagagagaataaaaatataatgtgagtatgagagataaagttgtcacaaaatggttgtacaaatatcatttctc 27687579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 33422202 - 33422249
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  33422202 ggaagagagagaataaaaatataatgtgagtatgagagagaaagttgt 33422249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 44112542 - 44112495
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  44112542 ggaagagagagaataaaaatataatgtgagtatgagagagaaagttgt 44112495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 44641886 - 44641933
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  44641886 ggaagagagagaataaaaatataatgtgagtatgagagagaaagttgt 44641933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 50460695 - 50460771
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttct 84  Q
    |||||||||||||||  || ||||||||||||| | | ||||||||||||    ||| |||||||||||||||||||    
T  50460695 ggaagagagagaataagaagataatgtgagtatgagaaagaaagttgtacaaaaatggttgtacaaatatcatttct 50460771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 30530558 - 30530604
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    |||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  30530558 gaagagagagaataaaaatataatgtgagtatgagagagaaagttgt 30530604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 37117866 - 37117896
Alignment:
Q  29 aaaataatgtgagtataaaagagaaagttgt 59  Q
    |||||||||||||||||||||||||||||||    
T  37117866 aaaataatgtgagtataaaagagaaagttgt 37117896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 52417618 - 52417572
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    |||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  52417618 gaagagagagaataaaaatataatgtgagtatgagagagaaagttgt 52417572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 27787576 - 27787527
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||| ||| ||||||||||||| | ||||||||| |||||    
T  27787576 gaagagagagaataaaaacataatgtgagtatgagagagaaagtcgtaca 27787527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 15059725 - 15059681
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    |||||||||||| ||| ||||||||||||| | ||||||||||||    
T  15059725 agagagagaataaaaatataatgtgagtatgagagagaaagttgt 15059681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 21433386 - 21433430
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||| |||| ||| ||||||||||||||| ||||||||||||    
T  21433386 agagagaaaataaaaacataatgtgagtataagagagaaagttgt 21433430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 30414952 - 30414875
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||| ||||  || ||||||||||||| | |||||| |||||||    ||| ||||||||||||||||||||    
T  30414952 ggaagagagaaaataagaagataatgtgagtatgagagagaaggttgtacaaaaatggttgtacaaatatcatttctc 30414875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 40596037 - 40596114
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctc 85  Q
    |||||||||||| ||  || ||||||||||||| | ||||||||||||    | ||| ||||||||||||||||||||    
T  40596037 ggaagagagagagtaagaatataatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctc 40596114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 52267289 - 52267245
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||| || ||||||||||||||||||| | ||||||||||||    
T  52267289 agagagataaaataaaaataatgtgagtatgagagagaaagttgt 52267245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 52576288 - 52576332
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||| | || ||||||||||| ||||||||||||||||||||    
T  52576288 agagagaaagtaaaaaaataatgtcagtataaaagagaaagttgt 52576332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 25272679 - 25272599
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctcata 88  Q
    |||||||||||||||  || ||||||||||||||  ||||||||||||||    ||| |||||||||||||||||||||||    
T  25272679 ggaagagagagaataagaagataatgtgagtatatgagagaaagttgtacaaaaatggttgtacaaatatcatttctcata 25272599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 37848604 - 37848684
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca----tgattgtacaaatatcatttctcatat 89  Q
    ||||||||||||||  || ||||| | ||||| | |||||||||||||||    |||||||||||||||||||||||||||    
T  37848604 gaagagagagaataagaagataatattagtatgagagagaaagttgtacaaaaatgattgtacaaatatcatttctcatat 37848684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 27866520 - 27866599
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctcat 87  Q
    |||||||||||||||  || ||||||||||||| | ||| ||||||||||    ||| ||||||||||||||||||||||    
T  27866520 ggaagagagagaataagaagataatgtgagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctcat 27866599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 38197749 - 38197699
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||||  ||| ||||||||||||| |||||||||||||||||    
T  38197749 ggaagagagagaatgaaaagataatgtgagtatgaaagagaaagttgtaca 38197699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 45335950 - 45335900
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||||| || ||||||||||||| | |||||||||||||||    
T  45335950 ggaagagagagaatatgaagataatgtgagtatgagagagaaagttgtaca 45335900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 5198743 - 5198787
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||    
T  5198743 agagagagaataaaagtataatgtgagtataaaagagaaagttgt 5198787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 34992318 - 34992395
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctc 85  Q
    ||||||||||||||| ||| ||||||| ||||| ||||||| ||||||    | ||| ||||||||||||||||||||    
T  34992318 ggaagagagagaataaaaacataatgtaagtatgaaagagagagttgtcataaaatggttgtacaaatatcatttctc 34992395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 155964 - 156011
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  155964 ggaagagagagaataaaaacataatgtgagtatgagagagaaagttgt 156011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 5905953 - 5906025
Alignment:
Q  17 agagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||| |||  |||||||||||| | |||||||||| |||    ||||||||||||||||||||||||    
T  5905953 agagagaataaaaatctaatgtgagtatgagagagaaagttataccaaaatgattgtacaaatatcatttctc 5906025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 10591243 - 10591196
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||||||| ||||||||||||| | ||| ||||||||    
T  10591243 ggaagagagagaatataaacataatgtgagtatgagagacaaagttgt 10591196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 28548207 - 28548254
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||| ||| ||||||||||||| | |||||||||||||||    
T  28548207 agagagagaataaaaacataatgtgagtatgagagagaaagttgtaca 28548254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 37970016 - 37969969
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||| ||| ||||||||||||| | |||||||||||||||    
T  37970016 agagagagaataaaaacataatgtgagtatgagagagaaagttgtaca 37969969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 41458886 - 41458933
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||| ||| ||||||||||||| | |||||||||||||||    
T  41458886 agagagagaataaaaacataatgtgagtatgagagagaaagttgtaca 41458933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 47644793 - 47644746
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  47644793 ggaagagagagaataaaaatataatgtgagtatgagagagaaagttgt 47644746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 33465027 - 33465102
Alignment:
Q  17 agagagaatataaaaataatgtgagtataaaagagaaagttgtaca----tgattgtacaaatatcatttctcata 88  Q
    ||||||||||  || ||||||||||||| | ||||||| |||||||    || |||||||||||||||||||||||    
T  33465027 agagagaataagaagataatgtgagtatgagagagaaaattgtacaaaaatggttgtacaaatatcatttctcata 33465102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 44511227 - 44511177
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||||  || || |||||||||| |||||||||||||||||    
T  44511227 ggaagagagagaataagaacatcatgtgagtatgaaagagaaagttgtaca 44511177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 5174548 - 5174581
Alignment:
Q  26 ataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||||||||| ||||||||||||    
T  5174548 ataaaaataatgtgagtataagagagaaagttgt 5174581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 17039244 - 17039195
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||||  || ||||||||||||| | |||||||||||||||    
T  17039244 gaagagagagaataagaagataatgtgagtatgagagagaaagttgtaca 17039195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 6822516 - 6822593
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctc 85  Q
    |||||||||||||||  || ||||||||||||| | ||| ||||||||    | ||| ||||||||||||||||||||    
T  6822516 ggaagagagagaataagaagataatgtgagtatgagagaaaaagttgttagaaaatggttgtacaaatatcatttctc 6822593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 26041398 - 26041321
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctc 85  Q
    |||||||||||||||  || || |||||||||| ||||||||||||||    | ||| |||||| |||||||||||||    
T  26041398 ggaagagagagaataagaacatcatgtgagtatgaaagagaaagttgtcataaaatggttgtacgaatatcatttctc 26041321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 29923754 - 29923685
Alignment:
Q  17 agagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcattt 82  Q
    ||||||||||  || ||||||||||||| | ||||||||||||||    |||||||||||||| ||||||    
T  29923754 agagagaataataagataatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatgtcattt 29923685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 30391236 - 30391188
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgta 60  Q
    |||||||||||||||  || ||||||||||||||| ||| |||||||||    
T  30391236 ggaagagagagaataagaatataatgtgagtataagagaaaaagttgta 30391188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 36108259 - 36108215
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagtt 57  Q
    |||||||||||||| ||| ||||||||||||| | ||||||||||    
T  36108259 gaagagagagaataaaaatataatgtgagtatgagagagaaagtt 36108215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 40108212 - 40108164
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgta 60  Q
    |||||||||||||||  || ||||||||||||| | |||||||||||||    
T  40108212 ggaagagagagaataagaagataatgtgagtatgagagagaaagttgta 40108164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 41985102 - 41985160
Alignment:
Q  31 aataatgtgagtataaaagagaaagttgt-aca---tgattgtacaaatatcatttctc 85  Q
    |||||||||||||| | |||||||||||| |||   |||||||||||||||||||||||    
T  41985102 aataatgtgagtatgagagagaaagttgtcacaaattgattgtacaaatatcatttctc 41985160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 49142500 - 49142577
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||||||||  || ||||||||||||| | ||||||| || |||    ||| ||||||||||||||||||||    
T  49142500 ggaagagagagaataagaagataatgtgagtatgagagagaaaattttacaaaaatggttgtacaaatatcatttctc 49142577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 23141441 - 23141366
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac-atgattgtacaaatatcatttctca 86  Q
    |||||||||||||||| || ||||||||||||| | ||||| |||||||| |  ||||||||||||||||||||||    
T  23141441 ggaagagagagaatatgaagataatgtgagtatgagagagacagttgtacaaaaattgtacaaatatcatttctca 23141366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 23553231 - 23553156
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac-atgattgtacaaatatcatttctca 86  Q
    |||||||||||||||| || ||||||||||||| | ||||| |||||||| |  ||||||||||||||||||||||    
T  23553231 ggaagagagagaatatgaagataatgtgagtatgagagagacagttgtacaaaaattgtacaaatatcatttctca 23553156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 24727503 - 24727424
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctcat 87  Q
    |||||||| |||||| ||| ||||||||||||| | ||||||||||||||    ||| ||||||||||||||||||||||    
T  24727503 ggaagagatagaataaaaacataatgtgagtatgagagagaaagttgtaccaaaatggttgtacaaatatcatttctcat 24727424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 11728105 - 11728154
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  11728105 gaagagagagaataaaaacataatgtgagtatgaaagagaaagttgtaca 11728154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 27538903 - 27538980
Alignment:
Q  16 gagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctcatat 89  Q
    |||||||||||  || ||||||||||||| | ||||||||||||||    ||| ||||||||||||||||||||||||    
T  27538903 gagagagaataagaagataatgtgagtatcatagagaaagttgtacaaaaatggttgtacaaatatcatttctcatat 27538980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 27329093 - 27329169
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||||||| ||| |||||||  |||| | ||||||||||||||    ||||||||||||||||||||||||    
T  27329093 gaagagagagaataaaaacataatgtaggtatgagagagaaagttgtaccaaaatgattgtacaaatatcatttctc 27329169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 37827770 - 37827817
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgtac 61  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  37827770 aagagagagaataaaaagataatgtgagtataagagagaaagttgtac 37827817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 12208530 - 12208480
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||||  |||||||||||||||| |||||||||||| ||||    
T  12208530 ggaagagagagaataagaaaataatgtgagtatgaaagagaaagttataca 12208480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 27529617 - 27529567
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||||  || ||||||||||||||| |||||||||||||||    
T  27529617 ggaagagagagaataagaagataatgtgagtataatagagaaagttgtaca 27529567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 30340081 - 30340031
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||||| || ||||||||||||| | |||||||||||||||    
T  30340081 ggaagagagagaatatgaagataatgtgagtatgagagagaaagttgtaca 30340031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 43205181 - 43205107
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtacatga-ttgtacaaatatcatttctc 85  Q
    |||||||||||||||  || ||||||||||||| | |||||| ||||||||  | ||||||||||||||||||||    
T  43205181 ggaagagagagaataagaagataatgtgagtatgagagagaatgttgtacaaaagttgtacaaatatcatttctc 43205107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 40721858 - 40721809
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||| ||| ||||||||||||| | |||||||||||||||    
T  40721858 gaagagagagaataaaaacataatgtgagtatgagagagaaagttgtaca 40721809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 1277819 - 1277771
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgta 60  Q
    ||||||||||||||| ||||||||||||||||| | |||||| ||||||    
T  1277819 ggaagagagagaataaaaaaataatgtgagtatgagagagaatgttgta 1277771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 13881183 - 13881106
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||| ||||||||||  || ||||||||||||| ||||| ||||||||||    ||||||||||||| ||||||||||    
T  13881183 ggaaaagagagaataagaagataatgtgagtatgaaagataaagttgtacaaaaatgattgtacaaacatcatttctc 13881106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 14021308 - 14021231
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||| ||||||||||  || ||||||||||||| ||||| ||||||||||    ||||||||||||| ||||||||||    
T  14021308 ggaaaagagagaataagaagataatgtgagtatgaaagataaagttgtacaaaaatgattgtacaaacatcatttctc 14021231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 18749348 - 18749396
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||| ||||||||||||||||| | |||||| ||||||||    
T  18749348 aagagagagaataaaaaaataatgtgagtatgagagagaaggttgtaca 18749396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 20247852 - 20247900
Alignment:
Q  14 aagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||| ||| ||||||||||||| | |||||||||||||||    
T  20247852 aagagagagaataaaaacataatgtgagtatgagagagaaagttgtaca 20247900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 22296112 - 22296189
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||||||||  || ||||||||||||| | ||||||| ||||||    ||| ||||||||||||||||||||    
T  22296112 ggaagagagagaataagaagataatgtgagtatcagagagaaaattgtacaaaaatggttgtacaaatatcatttctc 22296189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 546368 - 546415
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  546368 ggaagagagagaataaaaatataatgtgagtatgagagagaaagttgt 546415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 5455436 - 5455483
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    |||||||||||||||  || ||||||||||||||| ||||||||||||    
T  5455436 ggaagagagagaataagaagataatgtgagtataagagagaaagttgt 5455483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 34373090 - 34373043
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||| ||| ||||||||||||| | |||||||||||||||    
T  34373090 agagagagaataaaaacataatgtgagtatgagagagaaagttgtaca 34373043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 43725293 - 43725246
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt 59  Q
    ||||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  43725293 ggaagagagagaataaaaacataatgtgagtatgagagagaaagttgt 43725246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 19523384 - 19523434
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||||  || ||||||||||||| | |||||||||||||||    
T  19523384 ggaagagagagaataagaagataatgtgagtatgagagagaaagttgtaca 19523434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 32128214 - 32128172
Alignment:
Q  18 gagagaatataaaaataatgtgagtataaaagagaaagttgta 60  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||    
T  32128214 gagagaataaaaagataatgtgagtatgaaagagaaagttgta 32128172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 35203732 - 35203782
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||||  ||| ||||||||||||| ||| |||||||||||||    
T  35203732 ggaagagagagaatggaaagataatgtgagtatgaaaaagaaagttgtaca 35203782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 6328754 - 6328705
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||||||| ||| ||||||||| ||| | |||||||||||||||    
T  6328754 gaagagagagaataaaaacataatgtgaatatgagagagaaagttgtaca 6328705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 17999829 - 17999784
Alignment:
Q  17 agagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    |||||||||| ||| ||||||||||||| | |||||||||||||||    
T  17999829 agagagaataaaaagataatgtgagtatgagagagaaagttgtaca 17999784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 19637316 - 19637267
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  19637316 gaagagagagaataagatgataatgtgagtatgaaagagaaagttgtaca 19637267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 19835909 - 19835860
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca 62  Q
    ||||||||||||||  |  ||||||||||||| |||||||||||||||||    
T  19835909 gaagagagagaataagatgataatgtgagtatgaaagagaaagttgtaca 19835860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 26387842 - 26387891
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac 61  Q
    |||||||||||||||  |||||||||||||||| | |||||| |||||||    
T  26387842 ggaagagagagaataagaaaataatgtgagtatgagagagaaggttgtac 26387891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 35008085 - 35008158
Alignment:
Q  13 gaagagagagaatataaaaataatgtgagtataaaagagaaagttgtacatga-ttgtacaaatatcatttctc 85  Q
    |||||||||||||| ||| ||||||||||||| | | | ||| |||||||  | ||||||||||||||||||||    
T  35008085 gaagagagagaataaaaagataatgtgagtatgagaaataaaattgtacaaaagttgtacaaatatcatttctc 35008158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 45202115 - 45202193
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtaca----tgattgtacaaatatcatttctca 86  Q
    |||||||||||||||  || ||||||||| ||| | ||||||||||||| |    || |||||||||||||||||||||    
T  45202115 ggaagagagagaataagaagataatgtgaatatgagagagaaagttgtaaaaaaatggttgtacaaatatcatttctca 45202193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 3585711 - 3585671
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaag 55  Q
    |||||||||||| ||| ||||||||||||||| ||||||||    
T  3585711 agagagagaataaaaatataatgtgagtataagagagaaag 3585671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 4723654 - 4723606
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgta 60  Q
    |||||||||||||||  || ||||||||||||| | |||||||||||||    
T  4723654 ggaagagagagaataagaagataatgtgagtatgagagagaaagttgta 4723606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 6666108 - 6666064
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagt 56  Q
    ||||||||||||||| ||| ||||||||||||| | |||||||||    
T  6666108 ggaagagagagaataaaaatataatgtgagtatgagagagaaagt 6666064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 10749662 - 10749702
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagaga 52  Q
    ||||||||||||||| ||| ||||||||||||| |||||||    
T  10749662 ggaagagagagaataaaaacataatgtgagtatgaaagaga 10749702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 22353158 - 22353235
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctc 85  Q
    ||||||||||| |||  || ||||||||||||| | | ||||||||||    | ||||||||||||||||||||||||    
T  22353158 ggaagagagaggataacaacataatgtgagtatgagaaagaaagttgtcacaaaatgattgtacaaatatcatttctc 22353235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 35705900 - 35705948
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgta 60  Q
    |||||||||||||||  || |||| |||||||| |||||||||||||||    
T  35705900 ggaagagagagaataagaagataacgtgagtatgaaagagaaagttgta 35705948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 36644078 - 36644110
Alignment:
Q  28 aaaaataatgtgagtataaaagagaaagttgta 60  Q
    ||||||||||||||||| |||||||||||||||    
T  36644078 aaaaataatgtgagtatgaaagagaaagttgta 36644110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 37737963 - 37738037
Alignment:
Q  15 agagagagaatataaaaataatgtgagtataaaagagaaagttgt---acatgattgtacaaatatcatttctca 86  Q
    ||||||||| || |||| |||||||||||| | ||||||||||||   | ||| |||| ||||||||||||||||    
T  37737963 agagagagagtaaaaaagtaatgtgagtatgagagagaaagttgtcgaaaatggttgttcaaatatcatttctca 37738037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 23272 - 23320
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgta 60  Q
    ||||||||||||||| ||||||||||||||||| | |||||| ||||||    
T  23272 ggaagagagagaataaaaaaataatgtgagtatgagagagaatgttgta 23320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 18630 - 18709
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt-aca---tgattgtacaaatatcatttctcat 87  Q
    ||||||||||||||| ||  ||||||| ||||| | ||||||| |||| |||   |||||||||||||||||||||||||    
T  18630 ggaagagagagaataaaaggataatgtaagtatgagagagaaaattgtcacaaattgattgtacaaatatcatttctcat 18709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 17126 - 17049
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgtac----atgattgtacaaatatcatttctc 85  Q
    |||||||||||||||  || |||||| |||||| | ||| ||||||||||    ||| ||||||||||||||||||||    
T  17126 ggaagagagagaataagaagataatgcgagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctc 17049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 31583 - 31660
Alignment:
Q  12 ggaagagagagaatataaaaataatgtgagtataaaagagaaagttgt----acatgattgtacaaatatcatttctc 85  Q
    |||||||||||||||  |  ||||||||||||| | ||||||||||||    | ||| ||||||||||||||||||||    
T  31583 ggaagagagagaataagagtataatgtgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctc 31660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University