View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_79 (Length: 327)
Name: NF6875A_low_79
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_79 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 19190619 - 19190313
Alignment:
| Q |
21 |
atcacgaccatccctaccataccctccaaaactttgctcattaccgtaaccactagaacgccctccatatccatatccaccactagaacggttttcttcg |
120 |
Q |
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| T |
19190619 |
atcacgaccatccctaccataccctccaaaactttgctcattaccgtaaccactagaacgccctccatatccatagccaccactagaacggttttcttcg |
19190520 |
T |
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| Q |
121 |
ccatatccaccaatactcgtacgccctccatcaccatatccacccccagaacgcccatatccactctcataacggtcattagcgccataaccaccaccag |
220 |
Q |
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| T |
19190519 |
ccatatccaccaatactcgaacgccctccatcaccatatccaccaccagaacgcccatatccactctcataacggtcattagcgccataaccaccaccag |
19190420 |
T |
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| Q |
221 |
aacggtcatcggaaccataaccaccaccaaaacgtccacctcaatccccgctatcgttattattcccataacaaccaccggaacgaccgttagaaccata |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
19190419 |
aacggtcatcggaaccataaccaccaccaaaacgtccacctccatacccgctctcgttattattcccataaccaccaccggaacgaccattagaaccata |
19190320 |
T |
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| Q |
321 |
accacca |
327 |
Q |
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||||||| |
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| T |
19190319 |
accacca |
19190313 |
T |
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