View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6875A_low_81 (Length: 326)
Name: NF6875A_low_81
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_81 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 44999140 - 44999366
Alignment:
| Q |
11 |
catagagaggcacacaaaccaagctatgggcgcaacaagcctacatacatcaacataaacaagtttatgaactataatagaacacaatcatatatagaag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44999140 |
catagagaggcacacaaaccaagctatgggcgcaacaagcctacatacatcaacataaacaagtttatgaattataatagaacacaatcatatatagaag |
44999239 |
T |
|
| Q |
111 |
gaaggaaaaaataaataaataaagaaatgtgagaacgttatatagaaatgggaacctccattgccacaatccactgaggacaatttgatccataaactcc |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44999240 |
gaaggaaaaaataaataaat----aaatgtgagaacgttatatagaaatgggaacctccattgccacaatccactgaggacaatttgatccataaactcc |
44999335 |
T |
|
| Q |
211 |
aattcgtgagccctataattgaaattacaca |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
44999336 |
aattcgtgagccctataattgaaattacaca |
44999366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 44999400 - 44999433
Alignment:
| Q |
288 |
gacaagtccttttacattgcaaacacttacatgt |
321 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
44999400 |
gacaagtcattttacattgcaaacacttacatgt |
44999433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University