View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_82 (Length: 324)
Name: NF6875A_low_82
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 5826974 - 5827291
Alignment:
| Q |
1 |
agatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5826974 |
agatggactgaatatcaaaactttcaaactaagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgcc |
5827073 |
T |
|
| Q |
101 |
aacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5827074 |
aacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaacttcataagctctcttccaggtg |
5827173 |
T |
|
| Q |
201 |
gttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatact |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827174 |
gttacaatacttcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatact |
5827273 |
T |
|
| Q |
301 |
tttacttgatgaggcaac |
318 |
Q |
| |
|
|||||||||||||||||| |
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| T |
5827274 |
tttacttgatgaggcaac |
5827291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 5768521 - 5768835
Alignment:
| Q |
1 |
agatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgcc |
100 |
Q |
| |
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||||||| || |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768521 |
agatggagtggatataaaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgcc |
5768620 |
T |
|
| Q |
101 |
aacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtg |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| || |
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| T |
5768621 |
aacatagcttatggcaaagaaggaggtgctatggaggatgagataattgcagcagctaaagcagccaatgcacacaatttcataagctctcttccaaatg |
5768720 |
T |
|
| Q |
201 |
gttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatact |
300 |
Q |
| |
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|||| | || || || || ||||||||||||||| ||||||| ||||| || || ||||| || ||||||||||| || |||||||||| | |||||| |
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| T |
5768721 |
gttatgacacctctgtcggggaaagaggcacacagctatcaggaggacagaagcagcgtattgctattgcaagagccatgctgaaaaaccccaaaatact |
5768820 |
T |
|
| Q |
301 |
tttacttgatgaggc |
315 |
Q |
| |
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||| ||||| ||||| |
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| T |
5768821 |
tttgcttgacgaggc |
5768835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 5829927 - 5829613
Alignment:
| Q |
1 |
agatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgcc |
100 |
Q |
| |
|
||||||| || || |||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5829927 |
agatggagtggatctcaaaactttcagattaagctggttgagacaacaaatggggttggttggtcaagagcctattcttttcaacgaaagcattcgtgct |
5829828 |
T |
|
| Q |
101 |
aacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtg |
200 |
Q |
| |
|
||||||| |||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||| |||||||| || |
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| T |
5829827 |
aacataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgcacacagcttcataagtaatcttccagatg |
5829728 |
T |
|
| Q |
201 |
gttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatact |
300 |
Q |
| |
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| || | || || || || ||||||||||| || | || || ||||| || || || || || ||||||||| | || | |||||||| | |||||| |
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| T |
5829727 |
gatatgacacgtctgttggagaaagaggcacgcaactgtccggaggacagaagcagcgcattgctattgcaagaaccatgctaaaaaaccccaaaatact |
5829628 |
T |
|
| Q |
301 |
tttacttgatgaggc |
315 |
Q |
| |
|
||| ||||||||||| |
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|
| T |
5829627 |
tttgcttgatgaggc |
5829613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 220 - 318
Target Start/End: Original strand, 5794793 - 5794883
Alignment:
| Q |
220 |
cgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgaggcaac |
318 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5794793 |
cgaaagaggcacacagttaccaggtggacaaaaacaatgt--------tgcaagagctatattgaaagaccctagaatacttttacttgatgaggcaac |
5794883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 29327441 - 29327124
Alignment:
| Q |
1 |
agatggactgaatatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgcc |
100 |
Q |
| |
|
||||||| || ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29327441 |
agatggagtggatatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgcgcc |
29327342 |
T |
|
| Q |
101 |
aacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtg |
200 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| | || |
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|
| T |
29327341 |
aacatagcttatggtaaagaagatggtgctacggaggatgagatcatagcagcagcgaacgcagccaatgcacacaacttcataagttctcttcctgatg |
29327242 |
T |
|
| Q |
201 |
gttacaatacatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatact |
300 |
Q |
| |
|
|||| | || || || ||||||||||||||||| |||| || ||||| || || || || || ||||||||||| || |||||||||||| |||||| |
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| T |
29327241 |
gttatgacacttctgttggcgaaagaggcacacaactatctggaggacagaagcagcgcattgcgattgcaagagccatgctgaaaaaccctaaaatact |
29327142 |
T |
|
| Q |
301 |
tttacttgatgaggcaac |
318 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
29327141 |
tttgcttgatgaggcaac |
29327124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 3431268 - 3431216
Alignment:
| Q |
236 |
ttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaa |
288 |
Q |
| |
|
||||| ||||||||||| ||| | || ||||||||||||||||| |||||||| |
|
|
| T |
3431268 |
ttatctggtggacaaaagcaaaggattgcaattgcaagagctatgttgaaaaa |
3431216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 17872447 - 17872391
Alignment:
| Q |
214 |
ggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgc |
270 |
Q |
| |
|
|||||| |||||||| | || ||||||||||||||||||||| | ||||||||||| |
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|
| T |
17872447 |
ggtaggagaaagagggattcaattatcaggtggacaaaaacaaagaatagcaattgc |
17872391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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