View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_94 (Length: 304)
Name: NF6875A_low_94
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_94 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 12487819 - 12487569
Alignment:
| Q |
23 |
actggctgccctgtggtgccgtcatagaggattatggcggaaaaacctacaacatcagccgatatttaccatgggggcgagcccaaaaatagccaccaat |
122 |
Q |
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| T |
12487819 |
actggctgccctgtggtgccgtcatagaggattatggcggaaaaacctacaacatcagccgatatttaccatgggggcgagcccaaaaatagccaccaat |
12487720 |
T |
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| Q |
123 |
atccaccatggccgacattcgaaaacactgtattgaacttgactgacagactttaaaacaaactaagaccgcattgtcaattttccattgaaagcacact |
222 |
Q |
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| T |
12487719 |
atgcaccatggccgacattcgaaaacactgtattgaacttgactgacagactttaaaacaaactaagaccacattgtcaattttccattgaaagcacact |
12487620 |
T |
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| Q |
223 |
cacattcaactagttagtttgtgtagttgcaaactataataatatcagtga |
273 |
Q |
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| T |
12487619 |
cacattcaactagttagtttgtgtagttgcaaactataataatatcagtga |
12487569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 64 - 247
Target Start/End: Complemental strand, 12541599 - 12541412
Alignment:
| Q |
64 |
aaaacctacaacatcagccgatatttaccatgggggcgagcccaaaaatagccaccaatatccaccatggccgacattcgaaaacactgt-----attga |
158 |
Q |
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| T |
12541599 |
aaaacctacaacgtcagtcgatatttacaaagagggcaagcccaaaaatcgccaccgatatcctccatggccgacattcgaaaacactgtattgtattga |
12541500 |
T |
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| Q |
159 |
acttgactgacagactttaaaacaaactaagaccgcattgtcaattttccattgaaagcacactcacattcaactagttagtttgtgta |
247 |
Q |
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| T |
12541499 |
acttgactgacagactttaaaacaaactaagaccacgttgtcaattttccatt-aaagcacactcacattcaattatttagtttgtgta |
12541412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 12509402 - 12509274
Alignment:
| Q |
64 |
aaaacctacaacatcagccgatatttaccatgggggcgagcccaaaaatagccaccaatatccaccatggccgacattcgaaaacactgtattgaacttg |
163 |
Q |
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|||||||||||| |||| |||||| ||| | |||||| ||||||||||| |||||| |||||| |||||||||| |||||| ||||| | |||||||||| |
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| T |
12509402 |
aaaacctacaacgtcagtcgatatctacgaagggggcaagcccaaaaatcgccaccgatatcctccatggccgatattcgataacacaggattgaacttg |
12509303 |
T |
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| Q |
164 |
actgacagactttaaaacaaactaagacc |
192 |
Q |
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||| || ||||||||||| | ||||||| |
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| T |
12509302 |
actctcaaactttaaaacataataagacc |
12509274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 12508940 - 12508899
Alignment:
| Q |
199 |
tcaattttccattgaaagcacactcacattcaactagttagt |
240 |
Q |
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| T |
12508940 |
tcaattttccattgaaagcacactcgcattcaactacttagt |
12508899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 34498884 - 34498964
Alignment:
| Q |
44 |
tcatagaggattatggcggaaaaacctacaacatcagccgatatttaccatgggggcgagcccaaaaatagccaccaatat |
124 |
Q |
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| T |
34498884 |
tcatagaggattatgctggaaagacctgcaatatcgaccgatatttaccattgcggcgagcccaaaaaccgccaccgatat |
34498964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 27610409 - 27610489
Alignment:
| Q |
44 |
tcatagaggattatggcggaaaaacctacaacatcagccgatatttaccatgggggcgagcccaaaaatagccaccaatat |
124 |
Q |
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| T |
27610409 |
tcatagaggattatgctggaaagacctgcaatattgaccgatatttaccattgcggcgagcccaaaaaccgccaccgatat |
27610489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 40554379 - 40554471
Alignment:
| Q |
34 |
tgtggtgccgtcatagaggattatggcggaaaaacctacaacatcagccgatatttaccatgggggcgagcccaaaaatagccaccaatatcc |
126 |
Q |
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||||| ||||||||| |||| ||||||||||| ||| | | ||||||||| ||| ||||| || |||||||||||| |||||| |||||| |
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| T |
40554379 |
tgtggcgccgtcatatcggatcatggcggaaaatcctgccatatcagccgaaattgggcatggcggagagcccaaaaattgccaccgatatcc |
40554471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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