View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_95 (Length: 303)
Name: NF6875A_low_95
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_95 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 7 - 294
Target Start/End: Complemental strand, 47280202 - 47279915
Alignment:
| Q |
7 |
cggggaatgccaatgtccatatggtttgatcacttgcaaaacagcaaggatatccagacaaattatttcccctcaagtgaatgttttagacagatagcta |
106 |
Q |
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| T |
47280202 |
cggggaacgccaatgtccatatggtttgatcacttgcaaaacagcaaggatatccagacaaattatttcccctcaagtgaatgttttagacagatagcta |
47280103 |
T |
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| Q |
107 |
ttcttccttcagatgacaaggcttctttgtgattcctagctatgagcatgtcctcattaggttctaagattttgcatttttcttccacaaattagattgc |
206 |
Q |
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| T |
47280102 |
ttcttccttcagatgacaaggcttctttgtgattcctagctatgagcatgtcctcattaggttctaagattttgcatttttcttccacaaattagattgc |
47280003 |
T |
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| Q |
207 |
tcttctaggtttgagagggaaattaaatgttttctccataaataatatttgaagaccttgttctgttttaatatttactcatattatt |
294 |
Q |
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| T |
47280002 |
tcttctaggtttgagagggaaattaaatgttttctccataaataatatttgaagaccttgttctgttttaatatttactcattttatt |
47279915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 49059919 - 49059873
Alignment:
| Q |
9 |
gggaatgccaatgtccatatggtttgatcacttgcaaaacagcaagg |
55 |
Q |
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| T |
49059919 |
gggaatgccaatgtccatagggtttgatcacttgcaaaacagcaagg |
49059873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 49059576 - 49059499
Alignment:
| Q |
58 |
atccagacaaattatttcccctcaagtgaatgttttagacagatagctattcttccttcagatgacaaggcttctttg |
135 |
Q |
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| T |
49059576 |
atccaaacaaattctttctcttcaagtgaatgttttagacagacagctgttcctccttcagataacatggcttctttg |
49059499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 47285831 - 47285733
Alignment:
| Q |
142 |
ctagctatgagcatgtcctcattaggttctaagattttgcatttttcttccacaaattagattgctcttctaggtttgagagggaaattaaatgttttct |
241 |
Q |
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| T |
47285831 |
ctagccatgagcatgtccttattcggttcctagcttttgcaattgtcttccacaatttggactgctcttcta----tgagagggaaatgacatgtgttct |
47285736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 16515487 - 16515448
Alignment:
| Q |
58 |
atccagacaaattatttcccctcaagtgaatgttttagac |
97 |
Q |
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| T |
16515487 |
atccagacaaattatttcccttcaagtgaatgttttagac |
16515448 |
T |
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