View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_97 (Length: 300)
Name: NF6875A_low_97
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_97 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 4 - 292
Target Start/End: Complemental strand, 18662091 - 18661803
Alignment:
| Q |
4 |
ccttcaacaaataaagcatacactcatacacactatatatacttacatagttacattacaattgcaacaacaataattaactaataaaatggcttacaca |
103 |
Q |
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| T |
18662091 |
ccttcaacaaataaagcatacactcatacacactatatatacttacatagttacattgcaattgcaacaacaataattaactaataaaatggcttacaca |
18661992 |
T |
|
| Q |
104 |
atttcacatattttggtagtcatgttgctatttcccttccaatgttcctcctctgtatcatctttgataaaaggatcctctctctcagtagagaaacata |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18661991 |
atttcacatattttggtagtcatgttgctatttcccttccaatgttcctcctctgtatcatctttgataaaaggatcctctctctcagtagagaaacata |
18661892 |
T |
|
| Q |
204 |
cagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatcaaattggcgacaacgcattttcattcaccatattgttc |
292 |
Q |
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| T |
18661891 |
cagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatcaaattggcgacaacgcattttcattcgccatatggttc |
18661803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 292
Target Start/End: Complemental strand, 21132930 - 21132694
Alignment:
| Q |
56 |
acattacaattgcaacaacaataattaactaataaaatggcttacacaatttcacatattttggtagtcatgttgctatttcccttccaatgttcctcct |
155 |
Q |
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| T |
21132930 |
acattgcaattgcaagaacaataattaactaataacatggttttcaaaatttcacatattttcctaatcttctttctatttcccttccaatgttcatctc |
21132831 |
T |
|
| Q |
156 |
ctgtatcatctttgataaaaggatcctctctctcagtagagaaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatca |
255 |
Q |
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| T |
21132830 |
atttatcatctttgaaaaaaggctcttctctctcagtagagaaacatgcagaagatgtaattgtttcttcaaagggaactttctctgctggattctatca |
21132731 |
T |
|
| Q |
256 |
aattggcgacaacgcattttcattcaccatattgttc |
292 |
Q |
| |
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||||| | ||| ||||||||| |||||| |||| |
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| T |
21132730 |
ggttggcaataacagcttttcattcgccatatggttc |
21132694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 54 - 261
Target Start/End: Complemental strand, 21127607 - 21127400
Alignment:
| Q |
54 |
ttacattacaattgcaacaacaataattaactaataaaatggcttacacaatttcacatattttggtagtcatgttgctatttcccttccaatgttcctc |
153 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||||| |||| || || ||||||||||||||| || || | || ||||||||||| |||||||| || |
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| T |
21127607 |
ttacattgcaattgcaagaacaataattaactaataacatggttttcaaaatttcacatattttcctaatcttctttctatttccctttcaatgttcatc |
21127508 |
T |
|
| Q |
154 |
ctctgtatcatctttgataaaaggatcctctctctcagtagagaaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctat |
253 |
Q |
| |
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| |||||||||||| ||| || || ||||||||||||||||||||| |||||||||||| ||| ||||||||||| || ||||||||||| |||||| |
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| T |
21127507 |
tcatttatcatctttgaaaaagggctcttctctctcagtagagaaacatgcagaagatgtaactgtttcttcaaagggaactttctctgctggattctat |
21127408 |
T |
|
| Q |
254 |
caaattgg |
261 |
Q |
| |
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||| |||| |
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| T |
21127407 |
caagttgg |
21127400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 100 - 292
Target Start/End: Complemental strand, 21120180 - 21119985
Alignment:
| Q |
100 |
cacaatttcacatattttggtagtcatgttgctatttcccttccaat---gttcctcctctgtatcatctttgataaaaggatcctctctctcagtagag |
196 |
Q |
| |
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|||||| ||| ||||||| ||||| ||||||||||||||||||||| |||| || |||||||||||||||| || ||||| |||||||| |||||| |
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| T |
21120180 |
cacaatatcatatatttttttagtcttgttgctatttcccttccaatattgttcatcttctgtatcatctttgaacaagggatcttctctctctgtagag |
21120081 |
T |
|
| Q |
197 |
aaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatcaaattggcgacaacgcattttcattcaccatattgttc |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || ||||||||||| || ||||||||||| || || || ||||| ||| |||||| |||| |
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| T |
21120080 |
aaacatacagaagatgtaattgtctcttcaaatggcactttctctgctggtttttatcaaattggtgaaaatgctttttccttcgccatatggttc |
21119985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 261
Target Start/End: Original strand, 39120049 - 39120254
Alignment:
| Q |
54 |
ttacattacaattgcaacaacaat-aattaactaataaaatggcttacacaatttcacatattttggtagtcatgttgctatttcccttccaatgttcct |
152 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| | |||||| |||||||||| || |||| ||| | ||| ||||||||||||||||||| | |
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| T |
39120049 |
ttacattgcaattgcaacaacaaacaattaactaaca---tggctttcacaatttcatattttttcctagcctacttgttatttcccttccaatgttcat |
39120145 |
T |
|
| Q |
153 |
cctctgtatcatctttgataaaaggatcctctctctcagtagagaaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttcta |
252 |
Q |
| |
|
| || ||||||| |||| ||||| |||||||| ||||||||||| || | |||||||||||||| |||||||| || | ||||| |||||||||| |
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| T |
39120146 |
cttcattatcatcattgaacaaagggtcctctctttcagtagagaagtatgctgaagatgtaattgtttcttcaaatggaatgttctcagctggcttctt |
39120245 |
T |
|
| Q |
253 |
tcaaattgg |
261 |
Q |
| |
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|||| |||| |
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|
| T |
39120246 |
tcaagttgg |
39120254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 261
Target Start/End: Original strand, 39129782 - 39129987
Alignment:
| Q |
54 |
ttacattacaattgcaacaacaat-aattaactaataaaatggcttacacaatttcacatattttggtagtcatgttgctatttcccttccaatgttcct |
152 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| | |||||| |||||||||| || |||| ||| | ||| ||||||||||||||||||| | |
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| T |
39129782 |
ttacattgcaattgcaacaacaaacaattaactaaca---tggctttcacaatttcatattttttcctagcctacttgttatttcccttccaatgttcat |
39129878 |
T |
|
| Q |
153 |
cctctgtatcatctttgataaaaggatcctctctctcagtagagaaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttcta |
252 |
Q |
| |
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| || ||||||| |||| ||||| |||||||| ||||||||||| || | |||||||||||||| |||||||| || | ||||| |||||||||| |
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| T |
39129879 |
cttcattatcatcattgaacaaagggtcctctctttcagtagagaagtatgctgaagatgtaattgtttcttcaaatggaatgttctcagctggcttctt |
39129978 |
T |
|
| Q |
253 |
tcaaattgg |
261 |
Q |
| |
|
|||| |||| |
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|
| T |
39129979 |
tcaagttgg |
39129987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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