View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_high_21 (Length: 362)
Name: NF6876A_high_21
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 53013051 - 53012860
Alignment:
| Q |
1 |
tcatatcactaataacaaaatcttgtaatgattgttacggttgaaaatattgctatctataattttacagtatagcattcactctttatatttgttcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
53013051 |
tcatatcactaataacaaaatcttgtaatgattgttacggttgaaaatattgctatctataattttacagtacaacattcactctttatatttgttcata |
53012952 |
T |
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| Q |
101 |
aaacttaactcaaatcgataaatatcgatattgttagtttaaacattttcgtacgaattccaacccgaaaccatgcttttaagaagcaaatg |
192 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53012951 |
aaacttaactcaaaccgataaatatcgatattgttagtttaaacattttcgtacgaattccaacctgaaaccatgcttttaagaagcaaatg |
53012860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 232 - 349
Target Start/End: Complemental strand, 53012828 - 53012711
Alignment:
| Q |
232 |
gtaaatatcaaactaagaatttaatttgtttgtgtaaaacaagttttgtgaaaacgttcaattatattatatgtgccacaaatagagatttgaacatgta |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53012828 |
gtaaatatcaaactaagaatttaatttgtttgtgtaaaacaagttttgtgaaaacgttcaattatattatatgtgccacaaatagagatttgaacatgta |
53012729 |
T |
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| Q |
332 |
cacttggtagtgatatat |
349 |
Q |
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|||||||||||||||||| |
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| T |
53012728 |
cacttggtagtgatatat |
53012711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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