View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_high_28 (Length: 331)

Name: NF6876A_high_28
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_high_28
NF6876A_high_28
[»] scaffold0029 (1 HSPs)
scaffold0029 (21-331)||(134455-134765)
[»] scaffold0002 (2 HSPs)
scaffold0002 (21-331)||(312282-312592)
scaffold0002 (21-331)||(327736-328046)
[»] chr4 (11 HSPs)
chr4 (44-331)||(8654697-8654984)
chr4 (15-331)||(3129577-3129890)
chr4 (78-331)||(47541154-47541406)
chr4 (147-331)||(7662966-7663150)
chr4 (138-331)||(2631627-2631820)
chr4 (184-331)||(23873240-23873387)
chr4 (184-331)||(55298849-55298996)
chr4 (138-331)||(20675251-20675444)
chr4 (138-331)||(8486699-8486892)
chr4 (15-64)||(7662904-7662953)
chr4 (266-331)||(49926112-49926177)
[»] chr5 (5 HSPs)
chr5 (15-331)||(10486515-10486831)
chr5 (138-331)||(34481176-34481369)
chr5 (217-331)||(587745-587859)
chr5 (276-317)||(23923092-23923133)
chr5 (286-323)||(27795720-27795757)
[»] chr1 (7 HSPs)
chr1 (40-331)||(21528390-21528685)
chr1 (23-331)||(36306013-36306321)
chr1 (138-331)||(37530795-37530988)
chr1 (184-331)||(32353061-32353208)
chr1 (138-331)||(48073149-48073342)
chr1 (250-331)||(48265548-48265629)
chr1 (259-331)||(30970447-30970519)
[»] chr3 (12 HSPs)
chr3 (47-331)||(49731559-49731843)
chr3 (20-331)||(30166944-30167255)
chr3 (138-331)||(2813218-2813411)
chr3 (138-331)||(29309637-29309830)
chr3 (138-331)||(6176196-6176389)
chr3 (210-331)||(9379326-9379447)
chr3 (259-331)||(23602002-23602074)
chr3 (267-331)||(25872955-25873019)
chr3 (259-316)||(8943596-8943653)
chr3 (286-325)||(48569905-48569944)
chr3 (288-326)||(46248738-46248776)
chr3 (273-325)||(18368808-18368860)
[»] chr7 (8 HSPs)
chr7 (20-331)||(15653305-15653616)
chr7 (20-285)||(46623968-46624233)
chr7 (138-331)||(13440282-13440475)
chr7 (138-319)||(12378446-12378627)
chr7 (259-331)||(45943080-45943152)
chr7 (202-325)||(43105546-43105669)
chr7 (288-326)||(27723973-27724011)
chr7 (260-325)||(41339760-41339825)
[»] chr8 (6 HSPs)
chr8 (15-331)||(7452581-7452897)
chr8 (138-328)||(16420728-16420918)
chr8 (260-325)||(12134563-12134628)
chr8 (282-331)||(19384572-19384621)
chr8 (277-323)||(13879344-13879390)
chr8 (275-323)||(7555684-7555732)
[»] chr2 (12 HSPs)
chr2 (20-331)||(45421748-45422060)
chr2 (21-331)||(13550353-13550663)
chr2 (138-330)||(26894330-26894522)
chr2 (138-330)||(26899769-26899961)
chr2 (184-331)||(43627728-43627875)
chr2 (235-331)||(31085452-31085548)
chr2 (235-331)||(33548101-33548197)
chr2 (21-253)||(13550884-13551116)
chr2 (276-325)||(36804147-36804196)
chr2 (276-331)||(22052856-22052911)
chr2 (287-325)||(36804362-36804400)
chr2 (277-323)||(40176905-40176951)
[»] scaffold0131 (1 HSPs)
scaffold0131 (15-208)||(4144-4337)
[»] scaffold0418 (1 HSPs)
scaffold0418 (147-331)||(7904-8088)
[»] chr6 (8 HSPs)
chr6 (21-331)||(26205577-26205887)
chr6 (184-331)||(25318083-25318230)
chr6 (138-331)||(23347185-23347378)
chr6 (184-331)||(15674054-15674205)
chr6 (279-323)||(33630334-33630378)
chr6 (260-323)||(4474935-4474998)
chr6 (301-331)||(1683269-1683299)
chr6 (259-325)||(5041753-5041819)
[»] scaffold0112 (1 HSPs)
scaffold0112 (260-325)||(15490-15555)


Alignment Details
Target: scaffold0029 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 21 - 331
Target Start/End: Original strand, 134455 - 134765
Alignment:
Q  21 tgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctg 120  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||     
T  134455 tgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatggagcta 134554  T
Q  121 atacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggc 220  Q
    |||||       |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  134555 atacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggc 134654  T
Q  221 agacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggct 320  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  134655 agacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggct 134754  T
Q  321 ttacttcttga 331  Q
    |||||||||||    
T  134755 ttacttcttga 134765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 21 - 331
Target Start/End: Original strand, 312282 - 312592
Alignment:
Q  21 tgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctg 120  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||     
T  312282 tgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatggagcta 312381  T
Q  121 atacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggc 220  Q
    |||||       |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  312382 atacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggc 312481  T
Q  221 agacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggct 320  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  312482 agacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggct 312581  T
Q  321 ttacttcttga 331  Q
    |||||||||||    
T  312582 ttacttcttga 312592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 21 - 331
Target Start/End: Original strand, 327736 - 328046
Alignment:
Q  21 tgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctg 120  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||     
T  327736 tgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatggagcta 327835  T
Q  121 atacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggc 220  Q
    |||||       |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  327836 atacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggc 327935  T
Q  221 agacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggct 320  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  327936 agacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggct 328035  T
Q  321 ttacttcttga 331  Q
    |||||||||||    
T  328036 ttacttcttga 328046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 44 - 331
Target Start/End: Original strand, 8654697 - 8654984
Alignment:
Q  44 tcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctgatacgnnnnnnnggttggatagg 143  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||       |||||||||||    
T  8654697 tcttaggggtagtgttggtgctggagagagtggatggtttggtgatcttgtggctaggagggttggagatggagctaatacgttgttttggttggatagg 8654796  T
Q  144 tggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcgg 243  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654797 tggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcgg 8654896  T
Q  244 agcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8654897 agcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgtagggctttacttcttga 8654984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 15 - 331
Target Start/End: Original strand, 3129577 - 3129890
Alignment:
Q  15 gtttggtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatg 114  Q
    |||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| | || ||||||||||||| |||||||||||||||||||||||    
T  3129577 gtttcgtgttggtggagggaggtgagtcgttttaggggtagtgatggtgatggagagggcggctggtttgttgatcatgtggctaggagggttggagatg 3129676  T
Q  115 gagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtc 214  Q
    ||||||||||        |||| | ||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| |||||    
T  3129677 gagctgatacattgttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagagaataagttcatgtc 3129776  T
Q  215 tgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgt 314  Q
    ||||||||||||||| ||| ||||||||||||||   || |||  |||||||||||||||| | ||||||| ||||||||||    ||||||||||||||    
T  3129777 tgtggcagacttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtgggaggag---atgttagcggagtgt 3129873  T
Q  315 agggctttacttcttga 331  Q
    |||||||||||||||||    
T  3129874 agggctttacttcttga 3129890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 78 - 331
Target Start/End: Complemental strand, 47541406 - 47541154
Alignment:
Q  78 tggtttgttgatcttgtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttc 177  Q
    ||||||||||||| ||||||||| ||| |||||||||||| |||||||       |||| ||||||||||||||||||||||||||| |||| ||||||     
T  47541406 tggtttgttgatcatgtggctagaagg-ttggagatggagatgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgttttt 47541308  T
Q  178 gtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtag 277  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||  ||| ||| ||||||||||||||||| |    
T  47541307 gtagactgtttgagttaacagagaataagttcatgtctgtggcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcg 47541208  T
Q  278 gttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
     ||||||| |||| |||||||  |||||||||||||||||||||||||||||||    
T  47541207 tttgtggcagtggaaggaggagatgttagcggagtgtagggctttacttcttga 47541154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 147 - 331
Target Start/End: Original strand, 7662966 - 7663150
Alignment:
Q  147 ttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 246  Q
    |||||||||||||| ||  ||||||||||||||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  7662966 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7663065  T
Q  247 agtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||  |||  |||| ||||||||||| ||||| ||||||| ||||||||||||  |||||| |||||||| |||||||||||||||    
T  7663066 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7663150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 138 - 331
Target Start/End: Complemental strand, 2631820 - 2631627
Alignment:
Q  138 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 237  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||||| |||||| | |||||||    
T  2631820 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttg 2631721  T
Q  238 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  2631720 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2631627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 184 - 331
Target Start/End: Original strand, 23873240 - 23873387
Alignment:
Q  184 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 283  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||| |   |||||||||||||||||||||  ||    
T  23873240 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg 23873339  T
Q  284 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  23873340 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23873387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 184 - 331
Target Start/End: Complemental strand, 55298996 - 55298849
Alignment:
Q  184 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 283  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||| |   ||||||||||||||||||| || ||    
T  55298996 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 55298897  T
Q  284 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  55298896 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 55298849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 138 - 331
Target Start/End: Complemental strand, 20675444 - 20675251
Alignment:
Q  138 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 237  Q
    ||||||||||||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| ||| || ||||| |||||| | | |||||    
T  20675444 gataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatatccgtggccgacttgctctttgttg 20675345  T
Q  238 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| | |  ||||||||| |||||||||||||    
T  20675344 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgcttgatgagtgtaggactttacttcttga 20675251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 138 - 331
Target Start/End: Original strand, 8486699 - 8486892
Alignment:
Q  138 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 237  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || |  |||||| | |||||||    
T  8486699 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttg 8486798  T
Q  238 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||||||| | |||||| |   |||||||||||||||||||||| |||| ||||||| |||| ||| |||   ||||||||||||||||||||||    
T  8486799 attcggaccggtggggggaggtgtggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttga 8486892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 7662904 - 7662953
Alignment:
Q  15 gtttggtgttggtggagggaggtgagtcgtcttaggggtagtgttggtga 64  Q
    |||| |||||||||| |||||||||||||| |||||| ||||| ||||||    
T  7662904 gtttcgtgttggtggggggaggtgagtcgtattagggatagtggtggtga 7662953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 49926112 - 49926177
Alignment:
Q  266 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    |||||| || || ||||||  |||||||||||| ||||||| ||||||||||||||| || |||||    
T  49926112 gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttttctgcttga 49926177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 331
Target Start/End: Original strand, 10486515 - 10486831
Alignment:
Q  15 gtttggtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatg 114  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |  | ||||||||||||| |||||||||||||||||||||||    
T  10486515 gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgatggtgatggagagtgcagctggtttgttgatcatgtggctaggagggttggagatg 10486614  T
Q  115 gagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtc 214  Q
    |||||||||||       ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||    
T  10486615 gagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacatagaataagttcatgtc 10486714  T
Q  215 tgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgt 314  Q
    ||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  10486715 tgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggacatgttagcggagtgt 10486814  T
Q  315 agggctttacttcttga 331  Q
    |||||||||||||||||    
T  10486815 agggctttacttcttga 10486831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 138 - 331
Target Start/End: Complemental strand, 34481369 - 34481176
Alignment:
Q  138 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 237  Q
    ||||||||||||||||| |||||| || ||||  | ||| || || |||||||||||||||||||||||| ||||||||||||| | ||| | |||||||    
T  34481369 gataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatgtctgtggcatatttgctctctgttg 34481270  T
Q  238 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||||||||    
T  34481269 attcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttcttga 34481176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 331
Target Start/End: Complemental strand, 587859 - 587745
Alignment:
Q  217 tggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtag 316  Q
    ||||| ||||||| |||||   ||||||||| ||||| | | | ||||||||||| |||||| | ||| |||||||||||||  |||||| |||||||||    
T  587859 tggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtag 587760  T
Q  317 ggctttacttcttga 331  Q
    |||||||||||||||    
T  587759 ggctttacttcttga 587745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 23923133 - 23923092
Alignment:
Q  276 aggttgtggctgtgggaggaggacttgttagcggagtgtagg 317  Q
    ||||||||| |||||||||||||  |||||||||||||||||    
T  23923133 aggttgtgggtgtgggaggaggagatgttagcggagtgtagg 23923092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 27795757 - 27795720
Alignment:
Q  286 tgtgggaggaggacttgttagcggagtgtagggcttta 323  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  27795757 tgtgggaggaggacttggtagaggagtgtagggcttta 27795720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 40 - 331
Target Start/End: Complemental strand, 21528685 - 21528390
Alignment:
Q  40 gtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctgatacgnnnnnnnggttgga 139  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||       |||||||    
T  21528685 gtcgtcttaggggtagtgatggtgatggagagagcggatggtttgttgatcatgtggctaggagggttggagatgaagctgatacgttgttttggttgga 21528586  T
Q  140 taggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgat 239  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| |||||||||    
T  21528585 taggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaacagagaataagttcatgtctgttggagacttgttctctgttgat 21528486  T
Q  240 tcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggag----tgtagggctttacttcttga 331  Q
    |||||||| ||||| ||| |||||||||||||||||||||| |||  ||||||||||||| ||||||||| |     |||||||||||||||||||    
T  21528485 tcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtgggaggaggacatgttagcggtggagacgtagggctttacttcttga 21528390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 331
Target Start/End: Complemental strand, 36306321 - 36306013
Alignment:
Q  23 ttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctgat 122  Q
    ||||||||||||||||||||||||||| | ||||||| |||| || ||  |||| |||||||| |  |  |||||||||||||||||||||||  |||||    
T  36306321 ttggtggagggaggtgagtcgtcttagtgatagtgttagtgagggtgattgtgggtggtttgtcggccacgtggctaggagggttggagatggttctgat 36306222  T
Q  123 acgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcag 222  Q
    |||       |||  ||||||||||||||||||||||||||  |||||| ||||||||| |||||||||||||| ||||||||| | |||| ||||||||    
T  36306221 acgttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaacggagaataagctcatgtatgtggcag 36306122  T
Q  223 acttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggcttt 322  Q
    ||||||| |||||||||| |||||||  ||| ||| | ||||||||||| ||||| ||||||| |||| |||||||  |||||| |||||||||||||||    
T  36306121 acttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaaggaggagatgttagaggagtgtagggcttt 36306022  T
Q  323 acttcttga 331  Q
    |||||||||    
T  36306021 acttcttga 36306013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 138 - 331
Target Start/End: Complemental strand, 37530988 - 37530795
Alignment:
Q  138 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 237  Q
    ||||||||||||||||| |||||| || ||||  |  || || || |||||||||||||||||||||||  ||||| ||||||||||||| | |||||||    
T  37530988 gataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagactatgtatgtggcagacttgctctctgttg 37530889  T
Q  238 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||||||||    
T  37530888 attcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttcttga 37530795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 184 - 331
Target Start/End: Original strand, 32353061 - 32353208
Alignment:
Q  184 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 283  Q
    |||||||||||||||||||||||| |||||| ||||| |||||| | |||||||||||||||| |||||| |   |||||||||||||||||||||| ||    
T  32353061 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 32353160  T
Q  284 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    || |||| ||||||| ||| |||  |||||||||||||||||||||||    
T  32353161 gcagtggaaggaggagttgctagatgagtgtagggctttacttcttga 32353208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 138 - 331
Target Start/End: Original strand, 48073149 - 48073342
Alignment:
Q  138 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 237  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  48073149 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 48073248  T
Q  238 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||  |||||||||||| ||| |||  |||||| ||||||||||||||||    
T  48073249 attcggagcggtggggggaggtgtggaggtggagacgtaggttatgggagtgggaggaggagttgctagatgagtgtggggctttacttcttga 48073342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 48265548 - 48265629
Alignment:
Q  250 ggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    |||| ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  48265548 ggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttga 48265629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 30970447 - 30970519
Alignment:
Q  259 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||||||||||||| ||||| ||||||  ||||||||||||  || | |||||||||||||| |||||||||||    
T  30970447 tgtggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttga 30970519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 47 - 331
Target Start/End: Original strand, 49731559 - 49731843
Alignment:
Q  47 taggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctgatacgnnnnnnnggttggataggtgg 146  Q
    ||||||||||| ||||||||||||| | || ||||||||||||| |||||||||||||||||||||||||||||| ||        |||| |||||||||    
T  49731559 taggggtagtgatggtgatggagagtgcggctggtttgttgatcatgtggctaggagggttggagatggagctgacacattgttttggtttgataggtgg 49731658  T
Q  147 ttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 246  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||    
T  49731659 ttaggggatgttcctttttgtgtccgttttcgtagactgtttgagttaacagagaataagttcatgtatgtggcagacttgttctctgttgatccggagc 49731758  T
Q  247 agtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    || |||| ||| ||||||||||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||    
T  49731759 agcggggggttatgtggaggtggagacgtagtttgtggcagtgggaggaggagttgttggcggagtgtagggctttacttcttga 49731843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 30166944 - 30167255
Alignment:
Q  20 gtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagct 119  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||| || ||  |||| ||||||| || ||  ||||||||||||||||| |||||  ||    
T  30166944 gtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggttct 30167043  T
Q  120 gatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtgg 219  Q
    ||||||       |||||||||||||||||||||||||||| ||  ||||||||||||||||  ||||||||||||||||||||||| | |||| |||||    
T  30167044 gatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtttgtgg 30167143  T
Q  220 cagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggc 319  Q
    |||||||||| |||||||||  |||||||  ||| ||||| ||||||||||| ||||| ||||||| ||||||||||||  ||||||||||||||||| |    
T  30167144 cagacttgttctctgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtaggac 30167243  T
Q  320 tttacttcttga 331  Q
    ||||||||||||    
T  30167244 tttacttcttga 30167255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 138 - 331
Target Start/End: Original strand, 2813218 - 2813411
Alignment:
Q  138 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 237  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  2813218 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 2813317  T
Q  238 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  2813318 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2813411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 138 - 331
Target Start/End: Complemental strand, 29309830 - 29309637
Alignment:
Q  138 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 237  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| ||||| |||||| | ||||| |    
T  29309830 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtcg 29309731  T
Q  238 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||| |||||||||||    
T  29309730 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcgttacttcttga 29309637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 138 - 331
Target Start/End: Original strand, 6176196 - 6176389
Alignment:
Q  138 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 237  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||| ||||||||||| |||||| || || |||||| | |||||||    
T  6176196 gataggtggataggggaggctcctctttgtgtgcggtttagacggttgtttgagttaatagagaataagtctatgtccgtcgccgacttgctctctgttg 6176295  T
Q  238 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||||||||| |||||| |   |||||||||||||||||||||| | || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  6176296 attcggagcggtggggggaggtgtggaggtggagacgtaggttatagcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 6176389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 331
Target Start/End: Complemental strand, 9379447 - 9379326
Alignment:
Q  210 atgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcgg 309  Q
    |||| ||||||| ||||||| | ||||||||| ||||||||||| | ||||||||||||||| || ||||| |||| |||||||||||   |||||||||    
T  9379447 atgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcgg 9379348  T
Q  310 agtgtagggctttacttcttga 331  Q
    |||||||||| ||||| |||||    
T  9379347 agtgtagggcattactacttga 9379326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 23602074 - 23602002
Alignment:
Q  259 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||||||||||||||| |||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  23602074 tgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23602002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 25872955 - 25873019
Alignment:
Q  267 tggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    |||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||| ||||    
T  25872955 tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttga 25873019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 8943653 - 8943596
Alignment:
Q  259 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtag 316  Q
    |||||| |||||||||||||||||||  ||||||||| || |||| ||||||||||||    
T  8943653 tgtggaagtggagacgtaggttgtgggcgtgggaggaagatttgtaagcggagtgtag 8943596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 286 - 325
Target Start/End: Original strand, 48569905 - 48569944
Alignment:
Q  286 tgtgggaggaggacttgttagcggagtgtagggctttact 325  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  48569905 tgtgggaggaggacttggtagaggagtgtagggctttact 48569944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 46248738 - 46248776
Alignment:
Q  288 tgggaggaggacttgttagcggagtgtagggctttactt 326  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  46248738 tgggaggaagacttgttaggggagtgtagggctttactt 46248776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 18368808 - 18368860
Alignment:
Q  273 cgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 325  Q
    |||||||||||| ||||||||||||  ||| ||| |||||||||||| |||||    
T  18368808 cgtaggttgtgggtgtgggaggaggctttgctagaggagtgtagggcattact 18368860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 8e-92; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 15653305 - 15653616
Alignment:
Q  20 gtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagct 119  Q
    |||||||||||||||||||||||||||||||| |||||||||||| || ||  |||| ||||||||||  |  |||||||||||||||||||||||| ||    
T  15653305 gtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttgttggccacgtggctaggagggttggagatggatct 15653404  T
Q  120 gatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtgg 219  Q
    ||||||       |||| ||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||| | |||||| |||    
T  15653405 gatacgttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaacggagaataagctcatgtctatgg 15653504  T
Q  220 cagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggc 319  Q
    |||||||||| |||||||||| |||||||  ||| ||||| ||||||||||| ||||| ||||||| ||||||||||||  |||||||||||||||||||    
T  15653505 cagacttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagggc 15653604  T
Q  320 tttacttcttga 331  Q
    ||||||||||||    
T  15653605 tttacttcttga 15653616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 46624233 - 46623968
Alignment:
Q  20 gtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagct 119  Q
    ||||||||||||||||||||||||| |||||| ||||||||| || || ||  |||| |||||||||| ||  ||||||||||||||| |||||||  ||    
T  46624233 gtgttggtggagggaggtgagtcgtattagggatagtgttggcgagggtgactgtgggtggtttgttggtcacgtggctaggagggttagagatggttct 46624134  T
Q  120 gatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtgg 219  Q
    ||||||       |||| ||||||||||||||||||||||||||  ||||||||||||| || |||||||||||||| ||||||||| | ||||||||||    
T  46624133 gatacgttgttttggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggagaataagctcatgtctgtgg 46624034  T
Q  220 cagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggc 285  Q
    |||||||||| |||||||||| |||||||  |||  |||| ||||||||||| ||||| |||||||    
T  46624033 cagacttgttctctgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggc 46623968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 138 - 331
Target Start/End: Complemental strand, 13440475 - 13440282
Alignment:
Q  138 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 237  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  13440475 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 13440376  T
Q  238 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||||||||| |||||| |   ||||||||||||||||||| || |||  |||||||||||| ||| |||  |||||| ||||||||||||||||    
T  13440375 attcggagcggtggggggaggtgtggaggtggagacgtagtttatggtagtgggaggaggagttgctagatgagtgttgggctttacttcttga 13440282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 319
Target Start/End: Original strand, 12378446 - 12378627
Alignment:
Q  138 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 237  Q
    ||||||||| |||||||||||||| |  |||  || | || ||| |||||||||||||  ||||||||| | |||||||||||| | ||||| | ||||     
T  12378446 gataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggcaaatttgttctttgtta 12378545  T
Q  238 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggc 319  Q
    | ||| ||| |||||| | ||||| |||| |||| || |||||||||| ||||||||||||  |||||||||||||||||||    
T  12378546 agtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatgttagcggagtgtagggc 12378627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 45943152 - 45943080
Alignment:
Q  259 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    |||||||||||||| |||| || |||| |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  45943152 tgtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 45943080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 325
Target Start/End: Complemental strand, 43105669 - 43105546
Alignment:
Q  202 ataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggactt 301  Q
    |||||| | |||| |||||||||||||| |||  |  |||| | || ||||| | ||||||||||||||| || ||||||||||  |||||||||||  |    
T  43105669 ataagtctttgtcggtggcagacttgttctctactagttcgcaacaatggggagatttgtggaggtggaggcgcaggttgtggcaatgggaggaggagat 43105570  T
Q  302 gttagcggagtgtagggctttact 325  Q
    |||||| ||||||||||| |||||    
T  43105569 gttagcagagtgtagggcgttact 43105546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 27723973 - 27724011
Alignment:
Q  288 tgggaggaggacttgttagcggagtgtagggctttactt 326  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  27723973 tgggaggaagacttgttaggggagtgtagggctttactt 27724011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 325
Target Start/End: Complemental strand, 41339825 - 41339760
Alignment:
Q  260 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 325  Q
    |||||||||| || | |||||||||  |||||||||||| || |||| |||||||||| |||||||    
T  41339825 gtggaggtggcgatgcaggttgtgggcgtgggaggaggaattattagaggagtgtaggactttact 41339760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 7452897 - 7452581
Alignment:
Q  15 gtttggtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatg 114  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||| || ||  |||| |||||| | |  |  ||||||||||||||||||||||    
T  7452897 gtttcgtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttctcgcccacgtggctaggagggttggagatg 7452798  T
Q  115 gagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtc 214  Q
    |  ||||||||       |||  ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  7452797 gttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggagaataagcttatgtc 7452698  T
Q  215 tgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgt 314  Q
    ||||||||||||||| |||||||||| |||||||  ||| ||| | ||||||||||| ||||| ||||||| |||||||||||  || |||| |||||||    
T  7452697 tgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtgggaggaggtgttattagaggagtgt 7452598  T
Q  315 agggctttacttcttga 331  Q
    |||||||||||||||||    
T  7452597 agggctttacttcttga 7452581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 138 - 328
Target Start/End: Original strand, 16420728 - 16420918
Alignment:
Q  138 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 237  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||||| |||||| | |||||||    
T  16420728 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttg 16420827  T
Q  238 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttct 328  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||| ||||||||||||||||    
T  16420828 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagcgtagggctttacttct 16420918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 325
Target Start/End: Complemental strand, 12134628 - 12134563
Alignment:
Q  260 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 325  Q
    |||||||||| | |||| |||||||  |||||||||||||||| ||| ||||||||||||||||||    
T  12134628 gtggaggtggcggcgtacgttgtgggcgtgggaggaggacttggtagaggagtgtagggctttact 12134563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 19384572 - 19384621
Alignment:
Q  282 tggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    |||| ||||||||||||  |||||| ||||||||||||||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttga 19384621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 323
Target Start/End: Original strand, 13879344 - 13879390
Alignment:
Q  277 ggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 323  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  13879344 ggttatgggtgtgggaggaggacttggtagaggagtgtagggcttta 13879390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 7555732 - 7555684
Alignment:
Q  275 taggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 323  Q
    |||||||||| ||||||||||| | || |||| ||||||||||||||||    
T  7555732 taggttgtgggtgtgggaggagaatttattagaggagtgtagggcttta 7555684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 45422060 - 45421748
Alignment:
Q  20 gtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagct 119  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||| || ||  |||| ||||||| || ||  ||||||||||||||||| |||||  ||    
T  45422060 gtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggttct 45421961  T
Q  120 gatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtgg 219  Q
    ||||||       |||||||||||||||||||||||||||| ||  ||||||||||||||||  ||||||||||||||||||||||| | |||| |||||    
T  45421960 gatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtatgtgg 45421861  T
Q  220 cagacttgttatctgttgattcggagcag-tggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtaggg 318  Q
    |||||||||| |||||||||  |||||||  ||||  |||| ||||||||||| ||||| |||| || ||||||||||||  ||||||||||||||||||    
T  45421860 cagacttgttctctgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtgggaggaggagatgttagcggagtgtaggg 45421761  T
Q  319 ctttacttcttga 331  Q
    |||| ||||||||    
T  45421760 cttttcttcttga 45421748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 331
Target Start/End: Complemental strand, 13550663 - 13550353
Alignment:
Q  21 tgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctg 120  Q
    |||||||||  |||||||||||||||||||||||| ||||||| ||| |  || || |||||||  ||||  |||   ||||| ||||| ||||| || |    
T  13550663 tgttggtggtcggaggtgagtcgtcttaggggtagggttggtgttggtggtagcggctggtttgaggatcaggtgttgaggagagttggtgatggggcag 13550564  T
Q  121 atacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggc 220  Q
    ||||        |||| ||||||||| ||||||| | |||| || ||||  | ||| || || |||||||||||||||||||||||| ||| |  |||||    
T  13550563 atacatcattttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggc 13550464  T
Q  221 agacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggct 320  Q
     |||||| | ||||||||||||||||||||||| | | |||||||||||||||||||||| |||| |||||| ||||||||| ||| |||||| ||||||    
T  13550463 ggacttgctttctgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagtgcagggct 13550364  T
Q  321 ttacttcttga 331  Q
    ||| |||||||    
T  13550363 ttaattcttga 13550353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 330
Target Start/End: Original strand, 26894330 - 26894522
Alignment:
Q  138 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 237  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||  | |||||| | |||||||    
T  26894330 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttg 26894429  T
Q  238 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttg 330  Q
     |||||||| ||||||     |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||    
T  26894430 cttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 330
Target Start/End: Original strand, 26899769 - 26899961
Alignment:
Q  138 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 237  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||||||  | |||||| | |||||||    
T  26899769 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttg 26899868  T
Q  238 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttg 330  Q
     |||||||| ||||||     |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||    
T  26899869 cttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 184 - 331
Target Start/End: Complemental strand, 43627875 - 43627728
Alignment:
Q  184 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 283  Q
    |||||||||||||||||||||||| |||||  ||||| |||||| | ||| |||||||||||  |||||| |   |||||||||||||||||||||| ||    
T  43627875 tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg 43627776  T
Q  284 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  43627775 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 43627728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 331
Target Start/End: Original strand, 31085452 - 31085548
Alignment:
Q  235 ttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||||||| ||||||||||| | | |||||||||||||| | |||||||| | ||||||||||||  ||||||| |||||||||||||||||||||||    
T  31085452 ttgattcagagcagtggggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttga 31085548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 331
Target Start/End: Complemental strand, 33548197 - 33548101
Alignment:
Q  235 ttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    |||||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  33548197 ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 33548101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 13551116 - 13550884
Alignment:
Q  21 tgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctg 120  Q
    |||||||||  |||||||||||||||||||||||| ||||||| ||| |  || || |||||||  ||||  |||   ||||| ||||| ||||| || |    
T  13551116 tgttggtggtcggaggtgagtcgtcttaggggtagggttggtgttggtggtagcggctggtttgaggatcaggtgttgaggagagttggtgatggggcag 13551017  T
Q  121 atacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggc 220  Q
    ||||        |||| ||||||||| ||||||| | |||| || ||||  | ||| || || |||||||||||||||||||||||| ||| |  |||||    
T  13551016 atacatcattttggttcgataggtggataggggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatattcgtggc 13550917  T
Q  221 agacttgttatctgttgattcggagcagtgggg 253  Q
     |||||| | |||||||||||||||||||||||    
T  13550916 ggacttgctttctgttgattcggagcagtgggg 13550884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 36804196 - 36804147
Alignment:
Q  276 aggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 325  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  36804196 aggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttact 36804147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 22052911 - 22052856
Alignment:
Q  276 aggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||||| |||| |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  22052911 aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 22052856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 325
Target Start/End: Complemental strand, 36804400 - 36804362
Alignment:
Q  287 gtgggaggaggacttgttagcggagtgtagggctttact 325  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  36804400 gtgggaggaggacttgttagaggagtgtagggctttact 36804362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 323
Target Start/End: Complemental strand, 40176951 - 40176905
Alignment:
Q  277 ggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 323  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  40176951 ggttatgggtgtgggaggaggacttggtagaggagtgtagggcttta 40176905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 4144 - 4337
Alignment:
Q  15 gtttggtgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatg 114  Q
    |||| ||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||||||||||||| ||||||| |||||||||||||||    
T  4144 gtttcgtggtggtggagggaggtgagtcgtattaggggtagtgatggtgatggagagagcggttggtttgttgatcatgtggctcggagggttggagatg 4243  T
Q  115 gagctgatacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtt 208  Q
    ||||| |||||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  4244 gagctcatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaatagagaataagtt 4337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 147 - 331
Target Start/End: Complemental strand, 8088 - 7904
Alignment:
Q  147 ttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 246  Q
    |||||||||||||| ||  ||||||||||||||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  8088 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7989  T
Q  247 agtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||  |||  |||| ||||||||||| ||||| ||||||| ||||||||||||  |||||| |||||||| |||||||||||||||    
T  7988 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 331
Target Start/End: Complemental strand, 26205887 - 26205577
Alignment:
Q  21 tgttggtggagggaggtgagtcgtcttaggggtagtgttggtgatggagagagtggatggtttgttgatcttgtggctaggagggttggagatggagctg 120  Q
    |||||||||  |||||||||||||||||||||||| ||||||| ||| |  || || ||||||   ||||  |||   ||||| ||||| ||||  ||||    
T  26205887 tgttggtggtcggaggtgagtcgtcttaggggtagggttggtgttggtggtagcggttggtttaaggatcaggtgttgaggagagttggtgatgaggctg 26205788  T
Q  121 atacgnnnnnnnggttggataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggc 220  Q
    ||||        |||| ||||||||| || |||| | |||| || ||||  | ||| || || |||||||||||||| |||||||||||||||| |||||    
T  26205787 atacatcgttttggttcgataggtggataagggaggctcctcttcgtgtgaggtttagtcggttgtttgagttaacaaagaataagtttatgtccgtggc 26205688  T
Q  221 agacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggct 320  Q
     |||||| |||||||||||||  ||| |||||| | |||||||||||||| ||||||||| |||| |||||||||||| ||| ||| |||||||||||||    
T  26205687 ggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatggcagtgggaggaggagttgctagaggagtgtagggct 26205588  T
Q  321 ttacttcttga 331  Q
    |||||||||||    
T  26205587 ttacttcttga 26205577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 184 - 331
Target Start/End: Complemental strand, 25318230 - 25318083
Alignment:
Q  184 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 283  Q
    |||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||| | |||||||||||||| ||||||||| ||    
T  25318230 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 25318131  T
Q  284 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    || |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  25318130 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 25318083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 138 - 331
Target Start/End: Original strand, 23347185 - 23347378
Alignment:
Q  138 gataggtggttaggggatgttccttttagtgtccgttttcgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 237  Q
    ||||||||| ||||||| | |||| || |||| || ||| |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  23347185 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgccgacttgctctctgttg 23347284  T
Q  238 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  23347285 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23347378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 184 - 331
Target Start/End: Complemental strand, 15674205 - 15674054
Alignment:
Q  184 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggc----gttttgtggaggtggagacgtaggt 279  Q
    ||||||||||||| |||||||||| |||||||||||| |||||  | ||||||||||| ||||  ||||||    |   |||||||||||||||||||||    
T  15674205 tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt 15674106  T
Q  280 tgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 331  Q
    |||||| |||||||||||| ||| |||  ||||| |||||||||||||||||    
T  15674105 tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttga 15674054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 33630378 - 33630334
Alignment:
Q  279 ttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 323  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtagggcttta 33630334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 4474998 - 4474935
Alignment:
Q  260 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 323  Q
    |||||||||||||||||||||||||  |||||||||| | || |||| ||||| |||| |||||    
T  4474998 gtggaggtggagacgtaggttgtgggcgtgggaggagaatttattagaggagtttaggacttta 4474935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 331
Target Start/End: Complemental strand, 1683299 - 1683269
Alignment:
Q  301 tgttagcggagtgtagggctttacttcttga 331  Q
    |||||||||||||||||||||||||||||||    
T  1683299 tgttagcggagtgtagggctttacttcttga 1683269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 5041819 - 5041753
Alignment:
Q  259 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 325  Q
    ||||||||||| | ||| | |||||| |||||||||| || ||||||| |||||||||||| |||||    
T  5041819 tgtggaggtggcgtcgtggtttgtgggtgtgggaggaagagttgttagaggagtgtagggcattact 5041753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 325
Target Start/End: Original strand, 15490 - 15555
Alignment:
Q  260 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 325  Q
    |||||||||| | || || ||||||  ||||||||||||  |||||| ||||||||||||||||||    
T  15490 gtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggctttact 15555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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