View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_high_43 (Length: 263)

Name: NF6876A_high_43
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_high_43
NF6876A_high_43
[»] chr5 (4 HSPs)
chr5 (24-263)||(37704454-37704693)
chr5 (25-255)||(37698974-37699207)
chr5 (24-255)||(37437520-37437747)
chr5 (24-263)||(37698636-37698855)
[»] chr4 (1 HSPs)
chr4 (152-254)||(16841007-16841109)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 24 - 263
Target Start/End: Original strand, 37704454 - 37704693
Alignment:
Q  24 accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704454 accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat 37704553  T
Q  124 ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcac 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704554 ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcac 37704653  T
Q  224 gaaagttggaatcttatttcaagttgtgataagataacaa 263  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37704654 gaaagttggaatcttatttcaagttgtgataagataacaa 37704693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 25 - 255
Target Start/End: Original strand, 37698974 - 37699207
Alignment:
Q  25 ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgaca 122  Q
    |||||||| |||| |||||||||||||| ||||  ||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||    
T  37698974 ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgaca 37699073  T
Q  123 tttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagc 221  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||||| |||||||||||||    
T  37699074 tttggcaacaatattaattcagtaacaatcatagaaaagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagc 37699173  T
Q  222 acgaaagttggaatcttatttcaagttgtgataa 255  Q
    || ||||||||||||||||| |||||||||||||    
T  37699174 actaaagttggaatcttattgcaagttgtgataa 37699207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 37437520 - 37437747
Alignment:
Q  24 accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat 123  Q
    |||||||||  |||||||||||||||||| |||||| ||||||  ||||||||| ||||  | ||||| |||||||||||| | |||| ||||||||||     
T  37437520 accaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaa 37437618  T
Q  124 ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagca 222  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || || ||||||| |||||||| |||||||||||||     
T  37437619 ttggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaagaccaagacttttcgaacgtaattagc- 37437717  T
Q  223 cgaaagttggaatcttatttcaagttgtgataa 255  Q
       |||||||||||||||| |||||||||||||    
T  37437718 ---aagttggaatcttattgcaagttgtgataa 37437747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 263
Target Start/End: Original strand, 37698636 - 37698855
Alignment:
Q  24 accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat 123  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||                  | | |||| ||||||||||     
T  37698636 accaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgttg-----------------accgtatagtgatatgacaa 37698718  T
Q  124 ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaatta--- 219  Q
    ||||||||||||||||        | |||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| ||||||||||       
T  37698719 ttggcaacaatattaa--------caatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaatt 37698810  T
Q  220 -gcacgaaagttggaatcttatttcaagttgtgataagataacaa 263  Q
     |||| ||||||||||||||||| |||||||||||||||||||||    
T  37698811 agcactaaagttggaatcttattgcaagttgtgataagataacaa 37698855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 16841109 - 16841007
Alignment:
Q  152 catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt 250  Q
    |||| |||||||||||||| | |||||||||||| ||||| ||||||| ||||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  16841109 catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt 16841011  T
Q  251 gata 254  Q
    ||||    
T  16841010 gata 16841007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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