View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_high_49 (Length: 248)
Name: NF6876A_high_49
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_high_49 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 17701395 - 17701163
Alignment:
| Q |
16 |
acatcatgaacaaacactattcttcaccttcttctcaccattcctttgataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17701395 |
acatcatgaacaaacactattcttcaccttcttctcaccattcgtttgataaacccaaaaacagccatgatcatgatcaccaacaatctcttgaaaatga |
17701296 |
T |
|
| Q |
116 |
taagaaaaacccaggttcaagaatctacagttgtgagttctgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgcttc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17701295 |
taagaaaaacccaggttcaagaatctacagttgtgagttttgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgctcc |
17701196 |
T |
|
| Q |
216 |
tctaagattcttgttcaacctgaaacaaacaaa |
248 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
17701195 |
tcgaagattcttgttcaacctgaaacaaacaaa |
17701163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 17662684 - 17662916
Alignment:
| Q |
16 |
acatcatgaacaaacactattcttcaccttcttctcaccattcctttgataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatga |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17662684 |
acatcatgaacaaaccctattcttcaccttcttctcaccattcgtttcataaacccaaaaacagccatgatcatgatcaccaacaatctcttgaaaatga |
17662783 |
T |
|
| Q |
116 |
taagaaaaacccaggttcaagaatctacagttgtgagttctgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgcttc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17662784 |
taagaaaaacccaggttcaagaatctacaattgtgagttttgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgctcc |
17662883 |
T |
|
| Q |
216 |
tctaagattcttgttcaacctgaaacaaacaaa |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
17662884 |
tctaagattcttgttcaacctgaaacaaacaaa |
17662916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 22667820 - 22667771
Alignment:
| Q |
23 |
gaacaaacactattcttcaccttcttctcaccattcctttgataaaccca |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
22667820 |
gaacaaacactattcttcaccttcttctcattattcgtttgataaaccca |
22667771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 22667110 - 22667050
Alignment:
| Q |
64 |
ataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatgataagaaaaa |
124 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||||| | ||||||||| ||||| |||||| |
|
|
| T |
22667110 |
ataaacccaacaacagccatgatcaagatcaccaagagactcttgaaactgatatgaaaaa |
22667050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University