View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_high_60 (Length: 204)

Name: NF6876A_high_60
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_high_60
NF6876A_high_60
[»] chr3 (4 HSPs)
chr3 (18-200)||(1047111-1047293)
chr3 (45-197)||(1071951-1072103)
chr3 (45-200)||(1087612-1087767)
chr3 (45-124)||(1104165-1104244)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 1047111 - 1047293
Alignment:
Q  18 acatcaactgttgtagttgcaagatccgtgaacaattcaaatgaagtttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttga 117  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1047111 acatcaactgttgttgttgcaagatctgtgaacaattcaaatgaggtttattactcatatagtcttgtaaacaagagtaatgtttcaataacttatttga 1047210  T
Q  118 accaaacgcttagtcttcacgaacgcattatatggagtccagaggacaatacttggagtggtattgagtcagtaccaaaagat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1047211 accaaacgcttagtcttcacgaacgcattatatggagtccagaggacaatacttggagtggtattgagtcagtaccaaaagat 1047293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 1071951 - 1072103
Alignment:
Q  45 gtgaacaattcaaatgaagtttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacgcttagtcttcacgaacgca 144  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||     
T  1071951 gtgatcaattcaaatgaagtttatttcacatatagtcttgtaaacaagagtatggtttcaataacttatttgaaccaaacgcttagtcttcatgaacgcg 1072050  T
Q  145 ttatatggagtccagaggacaatacttggagtggtattgagtcagtaccaaaa 197  Q
    |||||||||||||||||||||| |||||||| | |||| ||||||||||||||    
T  1072051 ttatatggagtccagaggacaacacttggagcgatattcagtcagtaccaaaa 1072103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 45 - 200
Target Start/End: Original strand, 1087612 - 1087767
Alignment:
Q  45 gtgaacaattcaaatgaagtttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacgcttagtcttcacgaacgca 144  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| || ||||||      
T  1087612 gtgaacaattcaaatgaagtttattacatatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacaactagtcatcgcgaacgtg 1087711  T
Q  145 ttatatggagtccagaggacaatacttggagtggtattgagtcagtaccaaaagat 200  Q
    |||  |||| |||||| ||| |||||||||||| |||||||||  | |||||||||    
T  1087712 ttaattggattccagaagacgatacttggagtgttattgagtcgttgccaaaagat 1087767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 1104165 - 1104244
Alignment:
Q  45 gtgaacaattcaaatgaagtttattacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaac 124  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1104165 gtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaac 1104244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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