View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_1 (Length: 678)
Name: NF6876A_low_1
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 16 - 565
Target Start/End: Original strand, 30274508 - 30275057
Alignment:
| Q |
16 |
acatcagatacgacaatgacactgacacgtaaatatcagtgataacataaaaatgactgcatattatcacatgtgttagcgttgtatctatactgttgtt |
115 |
Q |
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| T |
30274508 |
acattagatacgacaatgacactgacacgtaaatatcaatgataacataaaaatgactgcatattatcacatgtgttagcgttgtatctatactgttgtt |
30274607 |
T |
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| Q |
116 |
gtctgacactcacgccttcaatataaaacgtcgatgctacatgtgttgtaattgatttagcatatgtcatataaatggcctaccgtgacaatgacagatt |
215 |
Q |
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| T |
30274608 |
gtctgacactcacgccttcaatataaagcgtcgatgctacatgtgttgtaattgatttagcatatgtcatataaatggcctaccgtgacaatgacagatt |
30274707 |
T |
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| Q |
216 |
tgtcttcattaaagagaggttgatccccagaagcaggatcaactatggctaaccgttggtgtgccaaaaagcagtcaccatgttggtggagcccactcca |
315 |
Q |
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| T |
30274708 |
tgtcttcattaaagagaggttgatccccagaagcaggatcaactatggctaaccgttggtgtgccaaaaagcagtcaccatgttggtggagcccactcca |
30274807 |
T |
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| Q |
316 |
atcagggccacggtgcttcaatctgttacgtcaacaaacaaataatcaataatcaatcaattatccatattcagacacattaaactaaaggacaataata |
415 |
Q |
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| T |
30274808 |
atcagggccacggtgcttcaatctgttacgtcaacaaacaaataatcaataatcaatcaattatccatattcagacacattaaactaaaggacaataata |
30274907 |
T |
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| Q |
416 |
ttctttcaaagttactatgtcaccacatannnnnnnaataaaattacattttatatgagttgagtttggactttacaatgttgtagcatatattacgcac |
515 |
Q |
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| T |
30274908 |
ttctttcaatgttactatgtcaccacatatttttttaataaaattacattttatatgagttgagtttggactttacaatgttgtagcatatattacgcac |
30275007 |
T |
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| Q |
516 |
cacctagaaaatctttataagatgagtcacataattaataattgaaccaa |
565 |
Q |
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| T |
30275008 |
cacctagaaaatctttataagatgagtcacataattaataattgaaccaa |
30275057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 618 - 658
Target Start/End: Original strand, 30275152 - 30275192
Alignment:
| Q |
618 |
gaatatagttctacaattatttaactccttttaatcttttg |
658 |
Q |
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| T |
30275152 |
gaatatagttctacaattatttaactccttttaatcttttg |
30275192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 196 - 341
Target Start/End: Original strand, 25967341 - 25967486
Alignment:
| Q |
196 |
taccgtgacaatgacagatttgtcttcattaaagagaggttgatccccagaagcaggatcaactatggctaaccgttggtgtgccaaaaagcagtcacca |
295 |
Q |
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|||||||||||| | ||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||| || |||||| || |||||| |
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| T |
25967341 |
taccgtgacaataattgatttatcttcattgaagagaggttgatcaccagaagcaggatcaacaatggctaacctttgatgagccaaatagttatcacca |
25967440 |
T |
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| Q |
296 |
tgttggtggagcccactccaatcagggccacggtgcttcaatctgt |
341 |
Q |
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| T |
25967441 |
tgttggtggagcccactccagtctggaccacggtgcttcaatctgt |
25967486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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