View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_103 (Length: 330)
Name: NF6876A_low_103
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_103 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 32853698 - 32853424
Alignment:
| Q |
22 |
atgaaagaataaagggaattaatttttctgcagaagatgatgcaaataagttattctctactatgattaatgatcaaaaatctggtgagatgtggttttt |
121 |
Q |
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| T |
32853698 |
atgaaagaataaagggaattaatttttctgcagaagatgatgcaaataagttattctctactatgattaatgatcaaaaatctggtgagatgtggttttt |
32853599 |
T |
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| Q |
122 |
agatagtggctgcagcaatcatgtaacagggaatcaaaccatatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853598 |
agatagtggctgcagcaatcatgtaacagggaatcaaaccatatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacat |
32853499 |
T |
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| Q |
222 |
gttaaaattgaaggaaagggggttatagcagttcatactagtcaaggcaacaaacaattcattcatgatgtccat |
296 |
Q |
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| T |
32853498 |
gttaaaattgaaggaaagggggttatagcagttcatactagtcaaggcaacaaacaattcattcatgatgtccat |
32853424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 37176834 - 37176560
Alignment:
| Q |
22 |
atgaaagaataaagggaattaatttttctgcagaagatgatgcaaataagttattctctactatgattaatgatcaaaaatctggtgagatgtggttttt |
121 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37176834 |
atgaaagaataaagggaattaatttttctgcaaaagatgatgcaaataagttattctctactatgattaatgataaaaaatctggtgagatgtggttttt |
37176735 |
T |
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| Q |
122 |
agatagtggctgcagcaatcatgtaacagggaatcaaaccatatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacat |
221 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176734 |
agatagtggttgtagcaatcatgtaacagggaatcaaaccatatttgaagagctaaataaaaattattcttctcatgttgaacttggtgatggaaaacat |
37176635 |
T |
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| Q |
222 |
gttaaaattgaaggaaagggggttatagcagttcatactagtcaaggcaacaaacaattcattcatgatgtccat |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176634 |
gttaaaattgaaggaaagggggttatagcagttcatactagtcaaggcaacaaacaattcattcatgatgtccat |
37176560 |
T |
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