View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_104 (Length: 328)
Name: NF6876A_low_104
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_104 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 19190312 - 19190619
Alignment:
| Q |
1 |
gtggtggttatggttcgaatgggcgttccggtggtggttatgggaataataacgagagcgggtatggaggtggacgttttggtggtggttatggttccga |
100 |
Q |
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| T |
19190312 |
gtggtggttatggttctaatggtcgttccggtggtggttatgggaataataacgagagcgggtatggaggtggacgttttggtggtggttatggttccga |
19190411 |
T |
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| Q |
101 |
tgaccgttctggtggtggttatggcgctaatgaccgttatgagagtggatatgggcgttctgggggtggatatggtgatggagggcgtacgagtattggt |
200 |
Q |
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| T |
19190412 |
tgaccgttctggtggtggttatggcgctaatgaccgttatgagagtggatatgggcgttctggtggtggatatggtgatggagggcgttcgagtattggt |
19190511 |
T |
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| Q |
201 |
ggatatggcgaagaaaaccgttctagtggtggctatggatatggaggacgttctagtggttacggtaatgagcaaagttttggagggtatggtagggatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19190512 |
ggatatggcgaagaaaaccgttctagtggtggctatggatatggagggcgttctagtggttacggtaatgagcaaagttttggagggtatggtagggatg |
19190611 |
T |
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| Q |
301 |
gtcgtgat |
308 |
Q |
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|||||||| |
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| T |
19190612 |
gtcgtgat |
19190619 |
T |
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