View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_108 (Length: 320)
Name: NF6876A_low_108
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_108 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 54 - 320
Target Start/End: Original strand, 14444170 - 14444442
Alignment:
| Q |
54 |
tgacaaaaacatggccaaaggtgcacaagaagaccacaaactgagaagcaatgcacgtggaataacgactaacttctagagtaacttgatcattgatgca |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| ||||| ||||||||||||||||||||| |
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| T |
14444170 |
tgacaaaaacatggccaaaggtgcacaagaagaccacaaactgagaagcaatacatatggaataacaactaatttctaaagtaacttgatcattgatgca |
14444269 |
T |
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| Q |
154 |
aaacactaaaagacgataataacaactagcttcttgcttactcacttaaacaaagctctataaat------ataattcaaatgtgaaagacaactttctt |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14444270 |
aaacactaaaagacgataataacaactagcttcttgcttgctcacttaaacaaagctctataaatataaacataattcaaatgtgaaagacaactttctt |
14444369 |
T |
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| Q |
248 |
atacaatctctcatcaaatcacttctcttaaagaattttcatatgtaaataaattagaagcagaaagttcaaa |
320 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
14444370 |
atacaatctctcatcaaaacacttctcttaaagaattgtcatatgtaaataaattataagcagaaagttcaaa |
14444442 |
T |
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