View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_109 (Length: 317)

Name: NF6876A_low_109
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_109
NF6876A_low_109
[»] chr3 (2 HSPs)
chr3 (15-317)||(19607165-19607467)
chr3 (49-183)||(4576624-4576755)
[»] chr1 (1 HSPs)
chr1 (15-307)||(32604599-32604888)
[»] chr2 (3 HSPs)
chr2 (15-307)||(21022890-21023179)
chr2 (49-183)||(7230748-7230879)
chr2 (49-183)||(7230422-7230553)
[»] chr8 (3 HSPs)
chr8 (15-307)||(24956496-24956785)
chr8 (15-307)||(18176326-18176615)
chr8 (86-183)||(29564540-29564634)
[»] scaffold0005 (1 HSPs)
scaffold0005 (57-183)||(175922-176045)
[»] chr4 (2 HSPs)
chr4 (57-183)||(14641247-14641370)
chr4 (49-183)||(26110691-26110822)
[»] scaffold0020 (1 HSPs)
scaffold0020 (86-183)||(131180-131274)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 19607165 - 19607467
Alignment:
Q  15 atggacatcagaggtgaccgcaatttgagcattttcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtc 114  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19607165 atggacattagaggtgaccgcaatttgagccttttcaacttcattatgaccttcagatgcttcagttaaccgctcaaatgtgtttctcatagttgttgtc 19607264  T
Q  115 gtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttactttttgggtttagtattttccagagggataaatt 214  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19607265 gtcccaacctttgcctttccctttgtcactttctctcaattaatatctggtgaaacctttctttactttttgggtttagtattttccagagggataaatt 19607364  T
Q  215 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattaaattcaaatggcacacttaaagt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19607365 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattaaattcaaatggcacacttaaagt 19607464  T
Q  315 tga 317  Q
    |||    
T  19607465 tga 19607467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 183
Target Start/End: Original strand, 4576624 - 4576755
Alignment:
Q  49 tcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttct 148  Q
    |||| ||||||||||||||| | ||||| |  |||  ||||||||||| |||||||||||||||| |||||| ||||||  || |||||||| ||||||     
T  4576624 tcaatttcattatgaccttctgctgcttgaactaatcgctcaaatgtgattctcatagttgttgtagtcccagcctttgtcttaccctttgtaactttca 4576723  T
Q  149 ctccattaatatctggtgaaacctttctttacttt 183  Q
    | ||    |||||||||||||| ||||||| ||||    
T  4576724 cacc---catatctggtgaaacatttcttttcttt 4576755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 32604888 - 32604599
Alignment:
Q  15 atggacatcagaggtgaccgcaatttgagcattttcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtc 114  Q
    |||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||  ||||| |  |||| |||||||||| |||||||||||||||||     
T  32604888 atggacatgagaggtggccgcaatttgagccttttcaacttcattatgaccttcatctgctttaactaaccgctcaaatgtttttctcatagttgttgtt 32604789  T
Q  115 gtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttactttttgggtttagtattttccagagggataaatt 214  Q
    |||||||||||||| ||||||||||||||||||||||||   |||| ||||||||||||||||| ||||||||||| ||||||||||| |||| |||| |    
T  32604788 gtcccaacctttgcctttccctttgtcactttctctcca---atatttggtgaaacctttcttttctttttgggttgagtattttccacagggctaaagt 32604692  T
Q  215 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattaaattcaaatggcacac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  32604691 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattagattctaatggcacac 32604599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 307
Target Start/End: Original strand, 21022890 - 21023179
Alignment:
Q  15 atggacatcagaggtgaccgcaatttgagcattttcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtc 114  Q
    |||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||  ||||| |  |||| |||||||||| |||||||||||||||||     
T  21022890 atggacatgagaggtggccgcaatttgagccttttcaacttcattatgaccttcaactgcttaaactaaccgctcaaatgtttttctcatagttgttgtt 21022989  T
Q  115 gtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttactttttgggtttagtattttccagagggataaatt 214  Q
    |||||||||||||| ||||||||||||||||||||||||   |||| ||||||||||||||||| ||||||||||| ||||| ||||| |||| |||| |    
T  21022990 gtcccaacctttgcctttccctttgtcactttctctcca---atatttggtgaaacctttcttttctttttgggttgagtatattccatagggctaaagt 21023086  T
Q  215 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattaaattcaaatggcacac 307  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  21023087 ggtcaccaatattaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattagattctaatggcacac 21023179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 183
Target Start/End: Complemental strand, 7230879 - 7230748
Alignment:
Q  49 tcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttct 148  Q
    |||| ||||||||||| ||| ||||||| |  |||  |||||||||||||||||||||||||||  ||||||||||| |  || |||||||| |||||||    
T  7230879 tcaatttcattatgacattctgatgcttgaactaatcgctcaaatgtgtttctcatagttgttgcagtcccaaccttggtcttaccctttgtaactttct 7230780  T
Q  149 ctccattaatatctggtgaaacctttctttacttt 183  Q
    | ||    |||||||||||||||||||||| ||||    
T  7230779 cacc---catatctggtgaaacctttcttttcttt 7230748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 183
Target Start/End: Complemental strand, 7230553 - 7230422
Alignment:
Q  49 tcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttct 148  Q
    |||| ||||||||||| ||| ||||||| |  |||  |||||||||||||||||||||||||||  ||||||||||| |  || |||||||| |||||||    
T  7230553 tcaatttcattatgacattctgatgcttgaactaatcgctcaaatgtgtttctcatagttgttgcagtcccaaccttggtcttaccctttgtaactttct 7230454  T
Q  149 ctccattaatatctggtgaaacctttctttacttt 183  Q
    | ||    |||||||||||||||||| ||| ||||    
T  7230453 cacc---catatctggtgaaaccttttttttcttt 7230422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 24956785 - 24956496
Alignment:
Q  15 atggacatcagaggtgaccgcaatttgagcattttcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtc 114  Q
    |||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||  |||| |||||||||| ||||||||| ||||||      
T  24956785 atggacatgagaggtggccgcaatttgagccttttcaacttcattatgaccttcagctgcttcaactaaccgctcaaatgtttttctcataattgttgaa 24956686  T
Q  115 gtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttactttttgggtttagtattttccagagggataaatt 214  Q
    |||||||||||||| |||||||||||||||||| |||||   |||| ||||||||||||||||| ||||||||||| ||||||||||| |||| |||| |    
T  24956685 gtcccaacctttgcctttccctttgtcactttcactcca---atatatggtgaaacctttcttttctttttgggttgagtattttccacagggctaaagt 24956589  T
Q  215 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattaaattcaaatggcacac 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || || |||||||||| ||||    
T  24956588 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatctgtagtagtatttttgtcactagattcaaatggtacac 24956496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 307
Target Start/End: Original strand, 18176326 - 18176615
Alignment:
Q  15 atggacatcagaggtgaccgcaatttgagcattttcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtc 114  Q
    |||||||| ||||||| | ||||||||||| ||||||||||||||||||||||| | |||||||  |||| ||||||||||  ||||||||||||||||     
T  18176326 atggacatgagaggtggctgcaatttgagccttttcaacttcattatgaccttcggctgcttcaactaaccgctcaaatgttcttctcatagttgttgtt 18176425  T
Q  115 gtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttactttttgggtttagtattttccagagggataaatt 214  Q
    |||||||||||||| ||||||||||||||||||||||||   ||| |||||||||| ||||||| ||||||||||| ||||||||||| |||| |||| |    
T  18176426 gtcccaacctttgcctttccctttgtcactttctctcca---atagctggtgaaacttttcttttctttttgggttgagtattttccatagggctaaagt 18176522  T
Q  215 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattaaattcaaatggcacac 307  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| || | |||||||||||||    
T  18176523 ggtcaccaatatcaaattcactatcatcggagtcaattatttcttgtggcacatctgtagtagtatttttgccactacaatcaaatggcacac 18176615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 29564634 - 29564540
Alignment:
Q  86 gctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttacttt 183  Q
    ||||||||||||||||||| |||||||  |||||||||||    || |||||||| |||||||| ||    |||||||||||||||||||||| ||||    
T  29564634 gctcaaatgtgtttctcattgttgttgcagtcccaaccttgttcttaccctttgtaactttctcacc---catatctggtgaaacctttcttttcttt 29564540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 183
Target Start/End: Original strand, 175922 - 176045
Alignment:
Q  57 attatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccatta 156  Q
    |||||||||||| | ||||| |  |||  |||||||||||||||||||||||||||  ||||||||||| |  || |||||||| |||||||| ||        
T  175922 attatgaccttctgctgcttgaactaatcgctcaaatgtgtttctcatagttgttgcagtcccaaccttggtcttaccctttgtaactttctcacc---c 176018  T
Q  157 atatctggtgaaacctttctttacttt 183  Q
    |||||||||||||||||||||| ||||    
T  176019 atatctggtgaaacctttcttttcttt 176045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 14641370 - 14641247
Alignment:
Q  57 attatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccatta 156  Q
    |||||||||||| | ||||| |  |||  |||||||||||||||||||||||||||  ||||||||||| |  || |||||||| |||||||| ||        
T  14641370 attatgaccttctgctgcttgaactaatcgctcaaatgtgtttctcatagttgttgcagtcccaaccttggtcttaccctttgtaactttctcacc---c 14641274  T
Q  157 atatctggtgaaacctttctttacttt 183  Q
    |||||||||||||||||||||| ||||    
T  14641273 atatctggtgaaacctttcttttcttt 14641247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 183
Target Start/End: Complemental strand, 26110822 - 26110691
Alignment:
Q  49 tcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttct 148  Q
    |||| ||||||||||||||| | ||||| |  |||  ||||||||||||||||||| |||||||  |||||||||||    || |||||||| |||||||    
T  26110822 tcaatttcattatgaccttctgctgcttgaactaatcgctcaaatgtgtttctcatcgttgttgcagtcccaaccttgatcttaccctttgtaactttct 26110723  T
Q  149 ctccattaatatctggtgaaacctttctttacttt 183  Q
    | ||    |||||||||||||||||||||| ||||    
T  26110722 cacc---catatctggtgaaacctttcttttcttt 26110691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 131274 - 131180
Alignment:
Q  86 gctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttacttt 183  Q
    |||||||||||||||||||||||||||  ||||||||||| |  || | |||||| |||||||| ||    |||||||||||||||||||||| ||||    
T  131274 gctcaaatgtgtttctcatagttgttgcagtcccaaccttggtcttacactttgtaactttctcacc---catatctggtgaaacctttcttttcttt 131180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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