View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_114 (Length: 314)
Name: NF6876A_low_114
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_114 |
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| [»] chr4 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 16898638 - 16898937
Alignment:
| Q |
15 |
catcaaatgaaatgtgaataacccgtgtcttcccccttttgaaacgaaacaaggagagcttcgtgttctgtcggtgcttgaaacaattttgtcttctcca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16898638 |
catcaaatgaaatgtgaataacccgtgtcttcccccttttgaaacgaaacaaggagagcttcgtgttctgtcggtgcttgaaacaattttgtcttctcca |
16898737 |
T |
|
| Q |
115 |
tattactatatctttagggtcaataattttatatgagaaactactgaactcaatcacttgctgccgttactcttcagttttctgttgaagtctatcctgt |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16898738 |
tattactatatctttagggtcaataattttatatgagaaactactgaactcaatcacttgctgccgttactcttcagttttctgttgaagtctatcctgt |
16898837 |
T |
|
| Q |
215 |
agaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggttacttccacttacgtaaatcaatagttaaaaccgcactcaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
16898838 |
agaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggttacttccaattacgtaaatcaatagttcaaaccgcactcaa |
16898937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 18347153 - 18347452
Alignment:
| Q |
15 |
catcaaatgaaatgtgaataacccgtgtcttcccccttttgaaacgaaacaaggagagcttcgtgttctgtcggtgcttgaaacaattttgtcttctcca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347153 |
catcaaatgaaatgtgaataacccgtgtcttcccccttttgaaacgaaacaaggagagcttcgtgttctgtcggtgcttgaaacaattttgtcttctcca |
18347252 |
T |
|
| Q |
115 |
tattactatatctttagggtcaataattttatatgagaaactactgaactcaatcacttgctgccgttactcttcagttttctgttgaagtctatcctgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347253 |
tattactatatctttagggtcaataattttatatgagaaactaccgaactcaatcacttgctgccgttactcttcagttttctgttgaagtctatcctgt |
18347352 |
T |
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| Q |
215 |
agaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggttacttccacttacgtaaatcaatagttaaaaccgcactcaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
18347353 |
agaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggttacttccaattacgtaaatcaatagttcaaaccgcactcaa |
18347452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 34689050 - 34689095
Alignment:
| Q |
98 |
caattttgtcttctccatattactatatctttagggtcaataattt |
143 |
Q |
| |
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|||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
34689050 |
caattttgtcttctccatattactatatctagaaggtcaataattt |
34689095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 13237338 - 13237039
Alignment:
| Q |
15 |
catcaaatgaaatgtgaataacccgtgtcttcccccttttgaaacgaaacaaggagagcttcgtgttctgtcggtgcttgaaacaattttgtcttctcca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13237338 |
catcaaatgaaatgtgaataacccgtgtcttcccccttttgaaacgaaacaaggagagcttcgtgttctgtcggtgcttgaaacaattttgtcttctcca |
13237239 |
T |
|
| Q |
115 |
tattactatatctttagggtcaataattttatatgagaaactactgaactcaatcacttgctgccgttactcttcagttttctgttgaagtctatcctgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13237238 |
tattactatatctttagggtcaataattttatatgagaaactaccgaactcaatcacttgctgccgttactcttcagttttctgttgaagtctatcctgt |
13237139 |
T |
|
| Q |
215 |
agaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggttacttccacttacgtaaatcaatagttaaaaccgcactcaa |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
13237138 |
agaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggttacttccaattacgtaaatcaatagttcaaaccgcactcaa |
13237039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 45 - 280
Target Start/End: Complemental strand, 41641818 - 41641583
Alignment:
| Q |
45 |
tcccccttttgaaacgaaacaaggagagcttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataatttt |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41641818 |
tcccccttttgaaacgaaacaaggagagcttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataatttt |
41641719 |
T |
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| Q |
145 |
atatgagaaactactgaactcaatcacttgctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgat |
244 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41641718 |
atatgagaaactaccgaactcaatcacttgctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgat |
41641619 |
T |
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| Q |
245 |
tgataggtttcgccgtaaacctaattggttacttcc |
280 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
41641618 |
tgataggtttcgccgtaaacctaattggttacttcc |
41641583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 198856 - 198557
Alignment:
| Q |
15 |
catcaaatgaaatgtgaataacccgtgtcttcccccttttgaaacgaaacaaggagagcttcgtgttctgtcggtgcttgaaacaattttgtcttctcca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
198856 |
catcaaatgaaatgtgaataacccgtgtcttcccccttttgaaacgaaacaaggagagcttcgtgttctgtcggtgcttgaaacaattttgtcttctcca |
198757 |
T |
|
| Q |
115 |
tattactatatctttagggtcaataattttatatgagaaactactgaactcaatcacttgctgccgttactcttcagttttctgttgaagtctatcctgt |
214 |
Q |
| |
|
|||||| |||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |
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| T |
198756 |
tattaccatatctctagagtcaataattttctatgaggaactactgaactcaatcacttgctgccgttactcaacagttttctgttgaggtctatcccgt |
198657 |
T |
|
| Q |
215 |
agaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattggttacttccacttacgtaaatcaatagttaaaaccgcactcaa |
314 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
198656 |
agaggtagtcaaattggatcagtgatcgatttctaggtttcgtcgtaaacctaattggttacttccaattacgtaaatcaatagttcaaaccgcactcaa |
198557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 60 - 221
Target Start/End: Original strand, 282205 - 282366
Alignment:
| Q |
60 |
gaaacaaggagagcttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactact |
159 |
Q |
| |
|
||||||||| | ||||| ||||||| |||||| |||||||||||||||||||||||||| |||||| ||| |||||||||||| |||||| ||||||| |
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| T |
282205 |
gaaacaaggggcgcttccggttctgtgcgtgcttcaaacaattttgtcttctccatattaccatatctctagagtcaataattttctatgaggaactact |
282304 |
T |
|
| Q |
160 |
gaactcaatcacttgctgccgttactcttcagttttctgttgaagtctatcctgtagaggta |
221 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| |
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|
| T |
282305 |
gaactcaatcacttgctgccgttactcaacagttttctgttgaggtctatcccgtagaggta |
282366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 72 - 314
Target Start/End: Complemental strand, 33064948 - 33064706
Alignment:
| Q |
72 |
gcttcgtgttctgtcggtgcttgaaacaattttgtcttctccatattactatatctttagggtcaataattttatatgagaaactactgaactcaatcac |
171 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
33064948 |
gcttcgtgttttgtcggtgcttgaaacaattttgccttctccatattactatatctttagggtcaaaaaatttatatgagaaactactgaactcaatcac |
33064849 |
T |
|
| Q |
172 |
ttgctgccgttactcttcagttttctgttgaagtctatcctgtagaggtactcaaattggatccgtgatcgattgataggtttcgccgtaaacctaattg |
271 |
Q |
| |
|
|| || |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |
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| T |
33064848 |
ttattgtcgttactctttagttttctgttgaagtctatccggtagaggtactcaaattggatccgtgatcgattgatagatttcgccgtaatcttaattg |
33064749 |
T |
|
| Q |
272 |
gttacttccacttacgtaaatcaatagttaaaaccgcactcaa |
314 |
Q |
| |
|
|||||||||| |||| ||||||||||||| ||| | ||||||| |
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|
| T |
33064748 |
gttacttccaattacataaatcaatagttcaaatcacactcaa |
33064706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 8385715 - 8385655
Alignment:
| Q |
15 |
catcaaatgaaatgtgaataacccgtgtcttcccccttttgaaacgaaacaaggagagctt |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8385715 |
catcaaatgaaatgtgaataacccgtgtcttcccccttttgaaacgaaacaaggagagctt |
8385655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 4162412 - 4162364
Alignment:
| Q |
118 |
tactatatctttagggtcaataattttatatgagaaactactgaactca |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4162412 |
tactatatctttagggtcaataattttatatgagaaacaactgaactca |
4162364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 4174851 - 4174896
Alignment:
| Q |
121 |
tatatctttagggtcaataattttatatgagaaactactgaactca |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4174851 |
tatatctttagggtcaataattttatatgagaaacaactgaactca |
4174896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 42350642 - 42350537
Alignment:
| Q |
14 |
acatcaaatgaaatgtgaataacccgtgtcttcccccttttgaaacgaaacaaggagagcttcgtgttctgtcggtgcttgaaacaattttgtcttctcc |
113 |
Q |
| |
|
||||||||| ||||||||||||| | | |||| | |||||||||||||||| ||| | || || |||| ||||||||||| |||||||||||||||| |
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|
| T |
42350642 |
acatcaaataaaatgtgaataactcttatcttttcttttttgaaacgaaacaaagagcgttttgtattctttcggtgcttgagacaattttgtcttctca |
42350543 |
T |
|
| Q |
114 |
atatta |
119 |
Q |
| |
|
|||||| |
|
|
| T |
42350542 |
atatta |
42350537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 33420354 - 33420417
Alignment:
| Q |
252 |
tttcgccgtaaacctaattggttacttccacttacg-taaatcaatagttaaaaccgcactcaa |
314 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
33420354 |
tttcgccgtaaatctaattggttacttccaattacgataaatcaatagttcaaaccgcactcaa |
33420417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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