View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_118 (Length: 306)

Name: NF6876A_low_118
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_118
NF6876A_low_118
[»] chr8 (4 HSPs)
chr8 (1-306)||(7452581-7452887)
chr8 (159-291)||(16420774-16420906)
chr8 (86-125)||(45255520-45255559)
chr8 (257-306)||(19384572-19384621)
[»] chr1 (11 HSPs)
chr1 (1-306)||(36306013-36306319)
chr1 (68-273)||(21528427-21528632)
chr1 (93-306)||(37530795-37531008)
chr1 (210-306)||(48265533-48265629)
chr1 (159-306)||(32353061-32353208)
chr1 (159-306)||(48073195-48073342)
chr1 (236-291)||(30970449-30970504)
chr1 (86-125)||(47106374-47106413)
chr1 (241-291)||(25504839-25504889)
chr1 (263-300)||(3073985-3074022)
chr1 (83-124)||(7396402-7396443)
[»] chr7 (10 HSPs)
chr7 (1-306)||(15653310-15653616)
chr7 (1-262)||(46623966-46624228)
chr7 (103-291)||(12378436-12378624)
chr7 (159-306)||(13440282-13440429)
chr7 (236-306)||(45943080-45943150)
chr7 (241-290)||(27941340-27941389)
chr7 (86-125)||(34232109-34232148)
chr7 (236-291)||(43105555-43105610)
chr7 (241-291)||(25924314-25924364)
chr7 (241-291)||(45992820-45992870)
[»] chr3 (11 HSPs)
chr3 (1-306)||(30166949-30167255)
chr3 (68-306)||(49731605-49731843)
chr3 (159-306)||(2813264-2813411)
chr3 (159-291)||(29309652-29309784)
chr3 (159-306)||(6176242-6176389)
chr3 (184-291)||(9379341-9379448)
chr3 (236-306)||(23602002-23602072)
chr3 (246-302)||(28308709-28308765)
chr3 (86-125)||(50544634-50544673)
chr3 (241-291)||(30435297-30435347)
chr3 (242-291)||(25872955-25873004)
[»] chr2 (10 HSPs)
chr2 (1-291)||(45421763-45422055)
chr2 (159-306)||(43627728-43627875)
chr2 (159-305)||(26894376-26894522)
chr2 (159-305)||(26899815-26899961)
chr2 (191-288)||(13550371-13550468)
chr2 (236-306)||(33548101-33548171)
chr2 (241-291)||(15017920-15017970)
chr2 (257-306)||(22052856-22052905)
chr2 (235-292)||(7300918-7300975)
chr2 (226-306)||(31085468-31085548)
[»] chr5 (7 HSPs)
chr5 (1-306)||(10486525-10486831)
chr5 (74-306)||(34481176-34481408)
chr5 (149-306)||(587745-587902)
chr5 (241-291)||(11574540-11574590)
chr5 (241-287)||(22095096-22095142)
chr5 (86-123)||(6049633-6049670)
chr5 (73-259)||(35122384-35122570)
[»] chr4 (15 HSPs)
chr4 (68-306)||(8654746-8654984)
chr4 (1-306)||(3129587-3129890)
chr4 (122-290)||(7662966-7663134)
chr4 (79-306)||(47541154-47541381)
chr4 (159-306)||(2631627-2631774)
chr4 (159-306)||(55298849-55298996)
chr4 (159-306)||(20675251-20675398)
chr4 (159-306)||(23873240-23873387)
chr4 (241-300)||(29553586-29553645)
chr4 (241-291)||(23657639-23657689)
chr4 (159-306)||(8486745-8486892)
chr4 (241-291)||(49926112-49926162)
chr4 (1-48)||(7662914-7662961)
chr4 (241-291)||(19114680-19114730)
chr4 (241-291)||(19647953-19648003)
[»] scaffold0029 (1 HSPs)
scaffold0029 (68-306)||(134527-134765)
[»] scaffold0002 (2 HSPs)
scaffold0002 (68-306)||(312354-312592)
scaffold0002 (68-306)||(327808-328046)
[»] scaffold0418 (2 HSPs)
scaffold0418 (122-290)||(7920-8088)
scaffold0418 (7-48)||(8093-8134)
[»] scaffold0131 (1 HSPs)
scaffold0131 (1-170)||(4154-4324)
[»] chr6 (9 HSPs)
chr6 (159-306)||(23347231-23347378)
chr6 (159-306)||(25318083-25318230)
chr6 (159-306)||(26205577-26205724)
chr6 (159-306)||(15674054-15674205)
chr6 (242-291)||(5085873-5085922)
chr6 (241-291)||(19255884-19255934)
chr6 (241-291)||(33640162-33640212)
chr6 (92-125)||(19236907-19236940)
chr6 (254-291)||(33630341-33630378)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 7452887 - 7452581
Alignment:
Q  1 ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||||||||    
T  7452887 ggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttctcgcccacgtggctaggagggttggagatggttctgatac 7452788  T
Q  100 gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac 199  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  7452787 gttgttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggagaataagcttatgtctgtggcagac 7452688  T
Q  200 ttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttac 299  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||   |||||    
T  7452687 ttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtgggaggaggtgttattagaggagtgtagggctttac 7452588  T
Q  300 ttcttga 306  Q
    |||||||    
T  7452587 ttcttga 7452581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 291
Target Start/End: Original strand, 16420774 - 16420906
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||| || ||||||   ||||||||||| |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  16420774 tgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 16420873  T
Q  259 gcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||||||||||||| |||| ||| ||||    
T  16420874 gcagtgggaggaggagttgctagatgagcgtag 16420906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 45255520 - 45255559
Alignment:
Q  86 gatggttctgatacgttgttttggtatgataagtggttag 125  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  45255520 gatggttccgatactttgttttggtatgataagtggttag 45255559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 19384572 - 19384621
Alignment:
Q  257 tggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    |||||||||||||||||| |||||| |||||||||   ||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttga 19384621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 36306319 - 36306013
Alignment:
Q  1 ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac 99  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36306319 ggtggagggaggtgagtcgtcttagtgatagtgttagtgagggtgattgtgggtggtttgtcggccacgtggctaggagggttggagatggttctgatac 36306220  T
Q  100 gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac 199  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  36306219 gttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaacggagaataagctcatgtatgtggcagac 36306120  T
Q  200 ttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttac 299  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||   |||||    
T  36306119 ttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaaggaggagatgttagaggagtgtagggctttac 36306020  T
Q  300 ttcttga 306  Q
    |||||||    
T  36306019 ttcttga 36306013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 68 - 273
Target Start/End: Complemental strand, 21528632 - 21528427
Alignment:
Q  68 gtggctaggagggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagt 167  Q
    ||||||||||||||||||||||   ||||||||||||||||||  |||| |||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  21528632 gtggctaggagggttggagatgaagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagt 21528533  T
Q  168 taacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtggga 267  Q
    |||| || |||||| |||||||||| | |||||||||||||||||||| ||||||   ||||||| | ||||||||||| ||||| || ||| |||||||    
T  21528532 taacagagaataagttcatgtctgttggagacttgttctctgttgattcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtggga 21528433  T
Q  268 ggagga 273  Q
    ||||||    
T  21528432 ggagga 21528427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 93 - 306
Target Start/End: Complemental strand, 37531008 - 37530795
Alignment:
Q  93 ctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgt 192  Q
    ||||||| | |||||||| ||||| |||||||| ||| |||||| | |||||  |  || || |  ||||||||||||| || ||||||   |||| |||    
T  37531008 ctgatacttcgttttggtctgataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagactatgtatgt 37530909  T
Q  193 ggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtaga 292  Q
    |||||||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || |||||||||||||||| |||| |||||||||||||     
T  37530908 ggcagacttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagg 37530809  T
Q  293 attttacttcttga 306  Q
      ||||||||||||    
T  37530808 gctttacttcttga 37530795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 48265533 - 48265629
Alignment:
Q  210 ttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||| |||||| || ||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||   ||||||||||||    
T  48265533 ttgatctggagcggcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttga 48265629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 159 - 306
Target Start/End: Original strand, 32353061 - 32353208
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||| || ||||||   ||||| ||||| |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  32353061 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 32353160  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||||| ||||||||||| |||| ||||||||   ||||||||||||    
T  32353161 gcagtggaaggaggagttgctagatgagtgtagggctttacttcttga 32353208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 306
Target Start/End: Original strand, 48073195 - 48073342
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  48073195 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 48073294  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    | ||||||||||||||||| |||| |||||| |   ||||||||||||    
T  48073295 ggagtgggaggaggagttgctagatgagtgtggggctttacttcttga 48073342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 30970449 - 30970504
Alignment:
Q  236 tggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||||||||||||||||||  ||||||||||||| || | | |||||||||    
T  30970449 tggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtag 30970504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 47106374 - 47106413
Alignment:
Q  86 gatggttctgatacgttgttttggtatgataagtggttag 125  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  47106374 gatggttccgatactttgttttggtatgataagtggttag 47106413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 25504839 - 25504889
Alignment:
Q  241 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||| |||||||||  ||||||||||||| |||||| |||||||||    
T  25504839 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtag 25504889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 3074022 - 3073985
Alignment:
Q  263 tgggaggaggagttgttagaggagtgtagaattttact 300  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  3074022 tgggaggaggagttgttaggggagtgtaggattttact 3073985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 7396402 - 7396443
Alignment:
Q  83 ggagatggttctgatacgttgttttggtatgataagtggtta 124  Q
    |||||||| | |||||||||||||||||||||||| ||||||    
T  7396402 ggagatgggtttgatacgttgttttggtatgataaatggtta 7396443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 15653310 - 15653616
Alignment:
Q  1 ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  15653310 ggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttgttggccacgtggctaggagggttggagatggatctgatac 15653409  T
Q  100 gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac 199  Q
    ||||||||||| ||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  15653410 gttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaacggagaataagctcatgtctatggcagac 15653509  T
Q  200 ttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttac 299  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||   |||||    
T  15653510 ttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagggctttac 15653609  T
Q  300 ttcttga 306  Q
    |||||||    
T  15653610 ttcttga 15653616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 46624228 - 46623966
Alignment:
Q  1 ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac 99  Q
    |||||||||||||||||||| ||| |||||||||||| |||||||| |||||| ||||||| || |||||||||||||||||| ||||||||||||||||    
T  46624228 ggtggagggaggtgagtcgtattagggatagtgttggcgagggtgactgtgggtggtttgttggtcacgtggctaggagggttagagatggttctgatac 46624129  T
Q  100 gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac 199  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  46624128 gttgttttggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggagaataagctcatgtctgtggcagac 46624029  T
Q  200 ttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcag 262  Q
    |||||||||||||||||||||||||||||  || | ||||||||||||||||| |||||||||    
T  46624028 ttgttctctgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggcag 46623966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 291
Target Start/End: Original strand, 12378436 - 12378624
Alignment:
Q  103 gttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagacttg 202  Q
    |||||||||||||| |||| ||| |||||||||| ||||||  || | || ||||||||||||||||| ||| |||||| |||||||||||||| | |||    
T  12378436 gttttggtatgataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggcaaatttg 12378535  T
Q  203 ttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    |||| |||| | | | ||| |  ||||| | | | |||| ||||||| || ||||||||||||||||||||| |||||| |||||||||    
T  12378536 ttctttgttaagtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatgttagcggagtgtag 12378624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 306
Target Start/End: Complemental strand, 13440429 - 13440282
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  13440429 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 13440330  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    | ||||||||||||||||| |||| |||||| |   ||||||||||||    
T  13440329 gtagtgggaggaggagttgctagatgagtgttgggctttacttcttga 13440282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 45943150 - 45943080
Alignment:
Q  236 tggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    |||||||||||  ||||||| ||||||||||||||||||||| |||||||||||||   ||||||||||||    
T  45943150 tggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 45943080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 27941340 - 27941389
Alignment:
Q  241 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgta 290  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||||||    
T  27941340 gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagtgta 27941389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 34232148 - 34232109
Alignment:
Q  86 gatggttctgatacgttgttttggtatgataagtggttag 125  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  34232148 gatggttctgacactttgttttggtatgataagtggttag 34232109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 43105610 - 43105555
Alignment:
Q  236 tggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    |||||||||||||| || |||||||| |||||||||||| ||||||  ||||||||    
T  43105610 tggaggtggaggcgcaggttgtggcaatgggaggaggagatgttagcagagtgtag 43105555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 25924364 - 25924314
Alignment:
Q  241 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||| || ||||||  |||||||||||||||||||| |||||||||    
T  25924364 gtggaggcggagtttgtgggcgtgggaggaggagttgttagtggagtgtag 25924314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 45992870 - 45992820
Alignment:
Q  241 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||| |||||||||  ||||||||||||| |||||| |||||||||    
T  45992870 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtag 45992820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 30166949 - 30167255
Alignment:
Q  1 ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac 99  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||| |||||| ||||||  || |||||||||||||||||||| ||||||||||||||    
T  30166949 ggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggttctgatac 30167048  T
Q  100 gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac 199  Q
    |||||||||||  |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||    
T  30167049 gttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtttgtggcagac 30167148  T
Q  200 ttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttac 299  Q
    ||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | |||||    
T  30167149 ttgttctctgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtaggactttac 30167248  T
Q  300 ttcttga 306  Q
    |||||||    
T  30167249 ttcttga 30167255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 68 - 306
Target Start/End: Original strand, 49731605 - 49731843
Alignment:
Q  68 gtggctaggagggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagt 167  Q
    |||||||||||||||||||||||  |||| || |||||||||| ||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  49731605 gtggctaggagggttggagatggagctgacacattgttttggtttgataggtggttaggggatgttcctttttgtgtccgttttcgtagactgtttgagt 49731704  T
Q  168 taacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtggga 267  Q
    |||| || |||||| |||||| |||||||||||||||||||||||||  |||||||| ||||||| | ||||||||||| ||||| ||||||||||||||    
T  49731705 taacagagaataagttcatgtatgtggcagacttgttctctgttgatccggagcagcggggggttatgtggaggtggagacgtagtttgtggcagtggga 49731804  T
Q  268 ggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    |||||||||||| | |||||||||   ||||||||||||    
T  49731805 ggaggagttgttggcggagtgtagggctttacttcttga 49731843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 159 - 306
Target Start/End: Original strand, 2813264 - 2813411
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  2813264 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 2813363  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  2813364 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2813411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 291
Target Start/End: Complemental strand, 29309784 - 29309652
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||| || ||||||   ||||| ||||| |||||| ||||||| |||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  29309784 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtcgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 29309685  T
Q  259 gcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||||||||||||| |||| ||||||||    
T  29309684 gcagtgggaggaggagttgctagatgagtgtag 29309652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 306
Target Start/End: Original strand, 6176242 - 6176389
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||  || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || |     
T  6176242 tgtttgagttaatagagaataagtctatgtccgtcgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttata 6176341  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  6176342 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 6176389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 291
Target Start/End: Complemental strand, 9379448 - 9379341
Alignment:
Q  184 catgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagag 283  Q
    ||||| ||||||| ||||||||| ||||||||  ||||||  ||||| | | |||||||||||||| || || |||||||||||||||| | |||||| |    
T  9379448 catgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcg 9379349  T
Q  284 gagtgtag 291  Q
    ||||||||    
T  9379348 gagtgtag 9379341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 23602072 - 23602002
Alignment:
Q  236 tggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||||||||| | ||| || ||||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  23602072 tggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23602002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 28308765 - 28308709
Alignment:
Q  246 ggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttc 302  Q
    ||||||| ||||||  ||||||||||||| | |||| ||||||||||||||||||||    
T  28308765 ggcgtaggttgtgggcgtgggaggaggagatcttaggggagtgtagaattttacttc 28308709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 50544673 - 50544634
Alignment:
Q  86 gatggttctgatacgttgttttggtatgataagtggttag 125  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  50544673 gatggttctgacaccttgttttggtatgataagtggttag 50544634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 30435347 - 30435297
Alignment:
Q  241 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||| || |||||| |||||||||||||| |||||| |||||||||    
T  30435347 gtggaggcggaggttgtgggagtgggaggaggagctgttaggggagtgtag 30435297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 25872955 - 25873004
Alignment:
Q  242 tggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||| ||||| || |||||||||||||||| |||| |||||||||||||    
T  25872955 tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtag 25873004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 8e-98; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 45422055 - 45421763
Alignment:
Q  1 ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac 99  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||| |||||| ||||||  || |||||||||||||||||||| ||||||||||||||    
T  45422055 ggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggttctgatac 45421956  T
Q  100 gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac 199  Q
    |||||||||||  |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||    
T  45421955 gttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtatgtggcagac 45421856  T
Q  200 ttgttctctgttgatttggagcagcagggg-gttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||||||||| ||||||||||||||  || | |||||||||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  45421855 ttgttctctgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtgggaggaggagatgttagcggagtgtag 45421763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 306
Target Start/End: Complemental strand, 43627875 - 43627728
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||| || ||||||   ||||  ||||| |||||| ||||| |||||| ||||  |  |||||  || ||||||||||| ||||| || ||    
T  43627875 tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg 43627776  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  43627775 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 43627728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 305
Target Start/End: Original strand, 26894376 - 26894522
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||| || ||||||   ||||||||  | |||||| ||||||||| || ||||| |  ||||   || ||||||||||| ||||| || ||    
T  26894376 tgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatg 26894475  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttg 305  Q
    ||||||||||||||||||| |||| ||||||||   |||||||||||    
T  26894476 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 305
Target Start/End: Original strand, 26899815 - 26899961
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||| || ||||||   ||||||||  | |||||| ||||||||| || ||||| |  ||||   || ||||||||||| ||||| || ||    
T  26899815 tgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatg 26899914  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttg 305  Q
    ||||||||||||||||||| |||| ||||||||   |||||||||||    
T  26899915 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 288
Target Start/End: Complemental strand, 13550468 - 13550371
Alignment:
Q  191 gtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtg 288  Q
    ||||| |||||| | |||||||||| |||||||  ||||| ||| ||||||||||| ||||| || ||||||||||| ||||| ||| ||||||||||    
T  13550468 gtggcggacttgctttctgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagtg 13550371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 33548171 - 33548101
Alignment:
Q  236 tggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||||||||| ||||| || ||||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  33548171 tggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 33548101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 15017970 - 15017920
Alignment:
Q  241 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||| |||||||||  ||||||||||||| ||||||||||||||||    
T  15017970 gtggaggcggagattgtgggtgtgggaggaggagatgttagaggagtgtag 15017920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 22052905 - 22052856
Alignment:
Q  257 tggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||||||||||||||||||| |||||||||||||   ||||||||||||    
T  22052905 tggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 22052856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 7300975 - 7300918
Alignment:
Q  235 atggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtaga 292  Q
    |||||| |||||| | |||||||||  ||||||||||||| || ||||||||||||||    
T  7300975 atggagttggaggagaagattgtgggtgtgggaggaggagatggtagaggagtgtaga 7300918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 31085468 - 31085548
Alignment:
Q  226 gggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||| ||| |||||||||||  | || ||||| ||||||||||||||| ||||||  ||||||||   ||||||||||||    
T  31085468 gggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttga 31085548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 7e-80; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 10486525 - 10486831
Alignment:
Q  1 ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac 99  Q
    |||||||||||||||||||||||| || ||||| |||||| || |||||  |  ||||||| |  || |||||||||||||||||||||||  |||||||    
T  10486525 ggtggagggaggtgagtcgtcttaggggtagtgatggtgatggagagtgcagctggtttgttgatcatgtggctaggagggttggagatggagctgatac 10486624  T
Q  100 gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac 199  Q
    |||||||||||  |||| |||||||| |||| ||||||| ||||||||||||||||| ||||||||||||||  | |||||| |||||||||||||||||    
T  10486625 gttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacatagaataagttcatgtctgtggcagac 10486724  T
Q  200 ttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttac 299  Q
    |||||||||||||||| |||||||| ||||||| | ||||||||||| ||||| ||||||||||||||||||||  |||||| |||||||||   |||||    
T  10486725 ttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggacatgttagcggagtgtagggctttac 10486824  T
Q  300 ttcttga 306  Q
    |||||||    
T  10486825 ttcttga 10486831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 306
Target Start/End: Complemental strand, 34481408 - 34481176
Alignment:
Q  74 aggagggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacgg 173  Q
    ||||| ||||| |||||  ||||||| | ||||||||  |||| |||||||| ||| |||||| | |||||  | ||| || |  ||||||||||||| |    
T  34481408 aggagagttggtgatggggctgatacttcgttttggtccgataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacag 34481309  T
Q  174 aaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggagga 273  Q
    | ||||||   |||||||||||| | ||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||||||||||||||||     
T  34481308 agaataagtctatgtctgtggcatatttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggg 34481209  T
Q  274 gttgttagaggagtgtagaattttacttcttga 306  Q
    |||| |||||||||||||   ||||||||||||    
T  34481208 gttgctagaggagtgtagggctttacttcttga 34481176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 306
Target Start/End: Complemental strand, 587902 - 587745
Alignment:
Q  149 tttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggc 248  Q
    |||||| |||||||||| ||||| || ||||||  |||  |  ||||| |||||||||||||   || ||||||   ||||| ||| |||||||||||||    
T  587902 tttcgtcgactgtttgaattaactgagaataagaccatcacaatggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggc 587803  T
Q  249 gtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||  | |||  ||||||||||||  ||||||||||||||||   ||||||||||||    
T  587802 gtaggctatggatgtgggaggaggatatgttagaggagtgtagggctttacttcttga 587745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 11574540 - 11574590
Alignment:
Q  241 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||| |||||||||  ||||||||||||| ||||||||||||||||    
T  11574540 gtggaggcggagattgtgggcgtgggaggaggagatgttagaggagtgtag 11574590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 22095096 - 22095142
Alignment:
Q  241 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagt 287  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||    
T  22095096 gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagt 22095142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 6049670 - 6049633
Alignment:
Q  86 gatggttctgatacgttgttttggtatgataagtggtt 123  Q
    |||||||||||||| |||||||||||||||||||||||    
T  6049670 gatggttctgatactttgttttggtatgataagtggtt 6049633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 259
Target Start/End: Original strand, 35122384 - 35122570
Alignment:
Q  73 taggagggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacg 172  Q
    ||||| ||| || |||||| |||||||||||||||||| | ||| |||||| || |||||||||||  |||  || ||||||||  ||||||| ||| |     
T  35122384 taggaaggtgggggatggtgctgatacgttgttttggtctcataggtggtttgatgatgttccttttagtgagcggtttcgtaggttgtttgacttagct 35122483  T
Q  173 gaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtgg 259  Q
    || || ||   ||| ||||||||  |  |||||||| ||||  ||||||||   |||||||  ||||||||||| ||||| ||||||    
T  35122484 gagaacaaaaccatttctgtggcgaatatgttctctcttgacctggagcagggaggggttgggtggaggtggagacgtaggttgtgg 35122570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 68 - 306
Target Start/End: Original strand, 8654746 - 8654984
Alignment:
Q  68 gtggctaggagggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagt 167  Q
    |||||||||||||||||||||||  || |||||||||||||||  |||| |||||||| |||||||||||| ||||||||||| ||||| ||||||||||    
T  8654746 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 8654845  T
Q  168 taacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtggga 267  Q
    |||| || |||||| | |||||||||||||||||||| |||||||||| |||||||  ||||||| | ||||||||||| ||||| ||||||||||||||    
T  8654846 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 8654945  T
Q  268 ggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    |||||| ||||||| |||||||||   ||||||||||||    
T  8654946 ggaggacttgttagcggagtgtagggctttacttcttga 8654984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 3129587 - 3129890
Alignment:
Q  1 ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac 99  Q
    |||||||||||||||||||| ||| || ||||| |||||| || ||| | ||  ||||||| |  || |||||||||||||||||||||||  |||||||    
T  3129587 ggtggagggaggtgagtcgttttaggggtagtgatggtgatggagagggcggctggtttgttgatcatgtggctaggagggttggagatggagctgatac 3129686  T
Q  100 gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagac 199  Q
     |||||||||| || || |||||||| |||||||||||| |||||||||||| ||||||||||||||||||| || |||||| |||||||||||||||||    
T  3129687 attgttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagagaataagttcatgtctgtggcagac 3129786  T
Q  200 ttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttac 299  Q
    ||||||||| |||||| ||||||||  ||||||   ||||||||||| ||| | |||||||||||   ||||||| |||||| |||||||||   |||||    
T  3129787 ttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtg---ggaggagatgttagcggagtgtagggctttac 3129883  T
Q  300 ttcttga 306  Q
    |||||||    
T  3129884 ttcttga 3129890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 122 - 290
Target Start/End: Original strand, 7662966 - 7663134
Alignment:
Q  122 ttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagc 221  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  7662966 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7663065  T
Q  222 agcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgta 290  Q
    |||||||| || | ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7663066 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgta 7663134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 79 - 306
Target Start/End: Complemental strand, 47541381 - 47541154
Alignment:
Q  79 ggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaat 178  Q
    ||||||||||||   ||||||||||||||||| ||||| |||||||| |||||||||||| ||||| |||||| ||||||||||||||||||| || |||    
T  47541381 ggttggagatggagatgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgtttttgtagactgtttgagttaacagagaat 47541282  T
Q  179 aagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgt 278  Q
    ||| |||||||||||||||||||||| |||||||||| |||||||| ||| ||| | ||||||||||| ||| | |||||||||||| |||||||| |||    
T  47541281 aagttcatgtctgtggcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcgtttgtggcagtggaaggaggagatgt 47541182  T
Q  279 tagaggagtgtagaattttacttcttga 306  Q
    ||| |||||||||   ||||||||||||    
T  47541181 tagcggagtgtagggctttacttcttga 47541154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 306
Target Start/End: Complemental strand, 2631774 - 2631627
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||| || ||||||   ||||||||||| |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  2631774 tgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 2631675  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  2631674 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2631627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 159 - 306
Target Start/End: Complemental strand, 55298996 - 55298849
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  55298996 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 55298897  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  55298896 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 55298849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 306
Target Start/End: Complemental strand, 20675398 - 20675251
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||| || ||||||   || || ||||| |||||| ||| |||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  20675398 tgtttgagttaacagagaataagtctatatccgtggccgacttgctctttgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 20675299  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||||||||||||||||| | || |||||||| | ||||||||||||    
T  20675298 gcagtgggaggaggagttgcttgatgagtgtaggactttacttcttga 20675251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 306
Target Start/End: Original strand, 23873240 - 23873387
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| |  ||    
T  23873240 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg 23873339  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  23873340 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23873387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 29553586 - 29553645
Alignment:
Q  241 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttact 300  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||||||| | ||||||    
T  29553586 gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagtgtaggactttact 29553645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 23657689 - 23657639
Alignment:
Q  241 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  23657689 gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagtgtag 23657639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 306
Target Start/End: Original strand, 8486745 - 8486892
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||| || ||||||   ||||| || |  |||||| |||||||||||| ||| | |  |||||  || ||||||||||| ||||| || ||    
T  8486745 tgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttgattcggaccggtggggggaggtgtggaggtggagacgtaggttatg 8486844  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    |||||||||| |||||||| ||||  |||||||   ||||||||||||    
T  8486845 gcagtgggagaaggagttgctagattagtgtagggctttacttcttga 8486892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 49926112 - 49926162
Alignment:
Q  241 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||| |||||||||  |||||||||||||||||||| |||||||||    
T  49926112 gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtag 49926162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 7662914 - 7662961
Alignment:
Q  1 ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagt 48  Q
    ||||| |||||||||||||| ||| |||||||| ||||||||||||||    
T  7662914 ggtggggggaggtgagtcgtattagggatagtggtggtgagggtgagt 7662961  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 19114730 - 19114680
Alignment:
Q  241 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||| |||||||||  ||||||||||||| | ||||||||||||||    
T  19114730 gtggaggcggagattgtgggtgtgggaggaggagatattagaggagtgtag 19114680  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 19648003 - 19647953
Alignment:
Q  241 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||| |||||||||  ||||||||||||| |||||| |||||||||    
T  19648003 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtag 19647953  T

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Target: scaffold0029 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 68 - 306
Target Start/End: Original strand, 134527 - 134765
Alignment:
Q  68 gtggctaggagggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagt 167  Q
    |||||||||||||||||||||||  || |||||||||||||||  |||| |||||||| |||||||||||| ||||||||||| ||||| ||||||||||    
T  134527 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 134626  T
Q  168 taacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtggga 267  Q
    |||| || |||||| | |||||||||||||||||||| ||| |||||| |||||||  ||||||| | ||||||||||| ||||| ||||||||||||||    
T  134627 taacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 134726  T
Q  268 ggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    |||||| ||||||| |||||||||   ||||||||||||    
T  134727 ggaggacttgttagcggagtgtagggctttacttcttga 134765  T

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Target: scaffold0002 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 68 - 306
Target Start/End: Original strand, 312354 - 312592
Alignment:
Q  68 gtggctaggagggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagt 167  Q
    |||||||||||||||||||||||  || |||||||||||||||  |||| |||||||| |||||||||||| ||||||||||| ||||| ||||||||||    
T  312354 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 312453  T
Q  168 taacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtggga 267  Q
    |||| || |||||| | |||||||||||||||||||| ||| |||||| |||||||  ||||||| | ||||||||||| ||||| ||||||||||||||    
T  312454 taacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 312553  T
Q  268 ggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    |||||| ||||||| |||||||||   ||||||||||||    
T  312554 ggaggacttgttagcggagtgtagggctttacttcttga 312592  T

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Target: scaffold0002; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 68 - 306
Target Start/End: Original strand, 327808 - 328046
Alignment:
Q  68 gtggctaggagggttggagatggttctgatacgttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagt 167  Q
    |||||||||||||||||||||||  || |||||||||||||||  |||| |||||||| |||||||||||| ||||||||||| ||||| ||||||||||    
T  327808 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 327907  T
Q  168 taacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtggga 267  Q
    |||| || |||||| | |||||||||||||||||||| ||| |||||| |||||||  ||||||| | ||||||||||| ||||| ||||||||||||||    
T  327908 taacagagaataagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 328007  T
Q  268 ggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    |||||| ||||||| |||||||||   ||||||||||||    
T  328008 ggaggacttgttagcggagtgtagggctttacttcttga 328046  T

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Target: scaffold0418 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 122 - 290
Target Start/End: Complemental strand, 8088 - 7920
Alignment:
Q  122 ttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagc 221  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  8088 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7989  T
Q  222 agcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgta 290  Q
    |||||||| || | ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7988 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgta 7920  T

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Target: scaffold0418; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 8134 - 8093
Alignment:
Q  7 gggaggtgagtcgtcttaaggatagtgttggtgagggtgagt 48  Q
    |||||||||||||| ||| |||||||| ||||||||||||||    
T  8134 gggaggtgagtcgtattagggatagtggtggtgagggtgagt 8093  T

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Target: scaffold0131 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 4154 - 4324
Alignment:
Q  1 ggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgatac 99  Q
    |||||||||||||||||||| ||| || ||||| |||||| || ||| | ||  ||||||| |  || |||||| ||||||||||||||||  || ||||    
T  4154 ggtggagggaggtgagtcgtattaggggtagtgatggtgatggagagagcggttggtttgttgatcatgtggctcggagggttggagatggagctcatac 4253  T
Q  100 gttgttttggtatgataagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaa 170  Q
    |||||||||||  |||| |||||||| |||||||||||| ||||||||||||||||| |||||||||||||    
T  4254 gttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaa 4324  T

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Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 159 - 306
Target Start/End: Original strand, 23347231 - 23347378
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  23347231 tgtttgagttaacagagaataagtctatgtccgtcgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 23347330  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  23347331 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23347378  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 306
Target Start/End: Complemental strand, 25318230 - 25318083
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    |||||||||||||  | |||||| | ||||| ||||| |||||| | ||||||||||   ||| |  ||||| | | ||||||||||  ||||| || ||    
T  25318230 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 25318131  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||||||||||||||||| |||||||||||||   ||||||||||||    
T  25318130 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 25318083  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 306
Target Start/End: Complemental strand, 26205724 - 26205577
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 258  Q
    |||||||||||||  | |||||| | ||||| ||||| |||||| | ||||||||||   ||| |  ||||| | | ||||||||||  ||||| || ||    
T  26205724 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 26205625  T
Q  259 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||||||||||||||||| |||||||||||||   ||||||||||||    
T  26205624 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 26205577  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 306
Target Start/End: Complemental strand, 15674205 - 15674054
Alignment:
Q  159 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagc----agcagggggttgtatggaggtggaggcgtagat 254  Q
    |||||||||||||||| ||||||   ||||||||||| |||||  ||||||||||||  ||||     |   ||||  || ||||||||||| ||||| |    
T  15674205 tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt 15674106  T
Q  255 tgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 306  Q
    ||||||||||||||||||||||| |||| ||||| ||   ||||||||||||    
T  15674105 tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttga 15674054  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 5085873 - 5085922
Alignment:
Q  242 tggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    |||||||| |||||||||  ||||||||||||| ||||||||||||||||    
T  5085873 tggaggcggagattgtgggcgtgggaggaggagatgttagaggagtgtag 5085922  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 19255934 - 19255884
Alignment:
Q  241 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||| |||||||||  ||||||||||||| |||||| |||||||||    
T  19255934 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtag 19255884  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 33640212 - 33640162
Alignment:
Q  241 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||| |||||||||  ||||||||||||| |||||| |||||||||    
T  33640212 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtag 33640162  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 19236940 - 19236907
Alignment:
Q  92 tctgatacgttgttttggtatgataagtggttag 125  Q
    |||||||||||||||||||||||||| |||||||    
T  19236940 tctgatacgttgttttggtatgataaatggttag 19236907  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 33630378 - 33630341
Alignment:
Q  254 ttgtggcagtgggaggaggagttgttagaggagtgtag 291  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtag 33630341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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