View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_119 (Length: 306)
Name: NF6876A_low_119
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_119 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 31696265 - 31695984
Alignment:
| Q |
18 |
cagtaaattattatttacagtgatggattaaatctgttaagagaaatagaaaacaattaacaaaaatggaaatggaaacttcagaagattgggaatatac |
117 |
Q |
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| T |
31696265 |
cagtaaattattatttacactgatggattaaatctgttaagaggaatagaaaacaattaacaaaaatggaaatggaaacttcagaagattgggaatatac |
31696166 |
T |
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| Q |
118 |
aggcacagaagatgaacacatcccaatcgatctcttctgttccaaagaagacgcccaaattccacgtggcaccctagagttcaccaatgcatccgggaac |
217 |
Q |
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| T |
31696165 |
aggcacagaagatgaacacatcccaatcgatctcttctgttccaaagaagacgcccgagttccacgtggcaccctagagttcaccaatgcatccgggaac |
31696066 |
T |
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| Q |
218 |
atggtcttcaaggtgcaacatcaaccatccaatcccaaactcttgcttgattccaatggtaatcctctattctccatccacc |
299 |
Q |
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| T |
31696065 |
atggtcttcaaggtgcaacatcaaccacccaatcccaaactcttgcttgattccaatgataatcctctattctcaatccacc |
31695984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 255
Target Start/End: Complemental strand, 31690026 - 31689861
Alignment:
| Q |
87 |
aaatggaaacttcagaagattgggaatatacaggcacagaagatgaacacatcccaatcgatctcttctgttccaaagaagacgcccaaattccacgtgg |
186 |
Q |
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| T |
31690026 |
aaatggaaacttcaga---tttggagtacacaggcaccgaagatcaacacatcccaatcgatcttttcggttccaaaaaacacgccggagttccacgtgg |
31689930 |
T |
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| Q |
187 |
caccctagagttcaccaatgcatccgggaacatggtcttcaaggtgcaacatcaaccatccaatcccaa |
255 |
Q |
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| T |
31689929 |
catcctagcgtttacagatgcatcggggaacatagtcttcaaggtgcaccgtcaaccacccgatcccaa |
31689861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 31689835 - 31689787
Alignment:
| Q |
254 |
aaactcttgcttgattccaatggtaatcctctattctccatccaccgtc |
302 |
Q |
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| T |
31689835 |
aaactcttgcttgattccaatgataatcctctgttttccatccaccgtc |
31689787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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