View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_12 (Length: 486)
Name: NF6876A_low_12
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 26 - 472
Target Start/End: Complemental strand, 29948136 - 29947684
Alignment:
| Q |
26 |
cttttttccgtggaatcaattggcctttaatccgcaacatggtagtatccttgtgatttcctttaaatttagtgattagaaataatatcttcatcatagc |
125 |
Q |
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| T |
29948136 |
cttttttccgtggaatcaattggcctttaatccgcaacatggtagtatccttgtgatttcctttaaatttagtgattagaaataatatcttcatcatagc |
29948037 |
T |
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| Q |
126 |
aaatggtttaggtctggttcaactggtgtttaaaagtaattttatcatttagaaaagttagaagcgatattattgcaataaccacc------tgtaatta |
219 |
Q |
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| T |
29948036 |
aaatggtttaggtctggttcaactggtgtttaaaagtaattttatcatttagaaaagttagaagcgatattattgcaataaccaccaccacctgtaatta |
29947937 |
T |
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| Q |
220 |
tctgtttcatgcagagtccacccccattagatgttcctcttcaattcataggaaaagatccaacggccaaggacaagaagtgggaagatgatggtgttct |
319 |
Q |
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| T |
29947936 |
tctatttcatgcagagtccacccccattagatgttcctcttcaattcataggaaaagatccaacggccaaggacaagaagtgggaagatgatggtgttct |
29947837 |
T |
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| Q |
320 |
caatacctccattgatatggatattttttgaagttcaacagaagattcgtcagtatgggatgttttgttatagtgattcatgtttcaaaacaatcactat |
419 |
Q |
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| T |
29947836 |
caatacctccattgatatggatattttttgaagttcaacagaagattcgtcagtatgggatgttttgttatagtgattcatgtttcaaaacaatcactat |
29947737 |
T |
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| Q |
420 |
aactgagatattcaagtgcaagaacttcgtctatcgatctggttgatgtccat |
472 |
Q |
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| T |
29947736 |
aactgagatattcaagtgcaagaacttcgtctatcgatctggttggtgtccat |
29947684 |
T |
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