View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_120 (Length: 304)
Name: NF6876A_low_120
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_120 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 10 - 304
Target Start/End: Complemental strand, 42852450 - 42852156
Alignment:
| Q |
10 |
tgagatggacatcagggatgatgatgaactacctgcaatggaagacaatacaaacaagatacaaccttttgagccgtatgttgatgcatatttagatagt |
109 |
Q |
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| T |
42852450 |
tgagacggacataagggatgatgatgaactacctgcaatggaagacaatacaaacaagatacaaccttttgagccgtatgttgatgcatatttagatggt |
42852351 |
T |
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| Q |
110 |
tttacttcacatgctttgtttatattttctatatcaatcaaacttggatgttatatggtagcatatagtggcatccacaagttatcaaattctcatattt |
209 |
Q |
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| T |
42852350 |
tttacttcacatgctttgtttatattctctatatcaatcaaacttggatgttatatggtagcatatagtggcatccacaagttatcaaattctcatattt |
42852251 |
T |
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| Q |
210 |
ttaatcannnnnnnatgtataggcctgaaatatttaaacatgattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaagtgat |
304 |
Q |
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| T |
42852250 |
ttaatcatttttttatgtataggcctgaaatatttaaacatgattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaagtgat |
42852156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 105 - 296
Target Start/End: Complemental strand, 42852630 - 42852440
Alignment:
| Q |
105 |
atagttttacttcacatgctttgtttatattttctatatcaatcaaacttggatgttatatggtagcatatagtggcatccacaagttatcaaattctca |
204 |
Q |
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| T |
42852630 |
atagtttttcttcccatactttgttcatattccctat--cattcaaacttggatgttgtatggtggcatataatggtatccacaacatatcaaattctca |
42852533 |
T |
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| Q |
205 |
tat--ttttaatcannnnnnnatgtataggcctgaaatatttaaacatgattcaaatgaaagagccaccgtgcaacaagagaatgagacagaca |
296 |
Q |
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| T |
42852532 |
tatttttttaatca-tgttttatgtataggcctgaaatatttaaacaggatttaaaagtaatagccaccgagcaacaagagactgagacggaca |
42852440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 42852155 - 42852092
Alignment:
| Q |
26 |
gatgatgatgaactacctgcaatggaagacaatacaaacaagatacaaccttttgagccgtatg |
89 |
Q |
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| T |
42852155 |
gatgatgatggactacctccactggaagccaatacaaacaggatacaaccttttgagctgtatg |
42852092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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