View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_121 (Length: 302)
Name: NF6876A_low_121
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_121 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 3176352 - 3176065
Alignment:
| Q |
13 |
tggacatcagctcttataaatagatcaactatcacactctctcaacacaccaacatcactcatctccctctctctcaaggttaccttctcttaaaccaaa |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
3176352 |
tggacattagctcttataaatagatcaactctcacactctctcaacacaccaacatcactcaactccctctctttcaaggttacattctcttaaaccaaa |
3176253 |
T |
|
| Q |
113 |
aaatggccaaaactttagtattagtttttctctttctcgaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaag |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3176252 |
aaatggccaaaactttagtattggtttttctctttctccaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaag |
3176153 |
T |
|
| Q |
213 |
tccacttcatcccccaactaagtcaccgattcataaaccattagctagcccacctcaccacaaccactcaccatcacatgcaccttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3176152 |
tccacttcatcccccaactaagtcaccgattcataaaccattagctagcccacctcaccacaaccactcaccatcacatgcaccttct |
3176065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 27 - 300
Target Start/End: Complemental strand, 24541537 - 24541263
Alignment:
| Q |
27 |
tataaatagatcaactatcacactctctcaacacaccaacatcactcatctccctctctctcaaggttaccttctcttaa-accaaaaaatggccaaaac |
125 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| ||||| |
|
|
| T |
24541537 |
tataaatagatcaactctcacactctctcaacacatcaacatcactcatctccctctctttcaaggttaccttctcttaacacaaaaaaatggcgaaaac |
24541438 |
T |
|
| Q |
126 |
tttagtattagtttttctctttctcgaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaagtccacttcatccc |
225 |
Q |
| |
|
| | |||| |||||||||||||| ||||||||||||||||||| || |||||| ||||||||||| |||||||||||||| ||| ||||| |||| || |
|
|
| T |
24541437 |
tctcttattgttttttctctttctccaaataacctctttcatagcatttgctgaaaagctagaaactcttcatcacaaaccagcaactccacatcattcc |
24541338 |
T |
|
| Q |
226 |
ccaactaagtcaccgattcataaaccattagctagcccacctcaccacaaccactcaccatcacatgcaccttct |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24541337 |
ccaactaagtcacctgttcataaaccattagctagcccacctcaccacaaccactcaccatcccatgcaccttct |
24541263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 41525460 - 41525197
Alignment:
| Q |
21 |
agctcttataaatagatcaactatcacactctctcaacacaccaacatcactcatctccctctctctcaaggttaccttctcttaaaccaaaaaatggcc |
120 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||| |||| ||| | |||||||||| |||||||||||| |
|
|
| T |
41525460 |
agctcctataaatagatcaactctcacactctctcaacccaccaacattacttctctccctctctttcaaagttgcattctcttaaaacaaaaaatggcc |
41525361 |
T |
|
| Q |
121 |
aaaactttagtatt-agtttttctctttctcgaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaagtccactt |
219 |
Q |
| |
|
|||||| ||||||| |||||||||| ||| |||||||||| |||||||| || |||||||||||||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
41525360 |
aaaactctagtattgtttttttctcttactccaaataacctccttcatagcatttgctgaagagctagaaactcttcatcacaaaccagcaactccactt |
41525261 |
T |
|
| Q |
220 |
catcccccaactaagtcaccgattcataaaccattagctagcccacctcaccacaaccactcacc |
284 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||| |||| |||||||||||||| ||||||||| |
|
|
| T |
41525260 |
cat-ccccaactaagtcaccggttcataaaccattggctaacccacctcaccacagccactcacc |
41525197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 37 - 252
Target Start/End: Original strand, 20963741 - 20963957
Alignment:
| Q |
37 |
tcaactatcacactctctcaacacaccaacatcactcatctccctctctctcaaggttaccttctcttaaaccaaaa--aatggccaaaactttagtatt |
134 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| || ||||||||||| |||||||| | ||||||||| ||||| ||||||||||||| | ||||| |
|
|
| T |
20963741 |
tcaactctcacactctctcaacacaccaacatcaatcctctccctctctttcaaggtt-ctttctcttaacacaaaaaaaatggccaaaactctggtatt |
20963839 |
T |
|
| Q |
135 |
agtttttctctttctcgaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaagtccacttcatcccccaactaag |
234 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
20963840 |
gttttttctctttctccaaataacctctttcatagcatttactgaagagctagaaacttttcataacaaaccagcaactccacttcatcccccaactaag |
20963939 |
T |
|
| Q |
235 |
tcaccgattcataaacca |
252 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
20963940 |
tcaccggttcataaacca |
20963957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 20963958 - 20963990
Alignment:
| Q |
268 |
caccacaaccactcaccatcacatgcaccttct |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
20963958 |
caccacaaccactcaccatcccatgcaccttct |
20963990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 251
Target Start/End: Complemental strand, 14675257 - 14675143
Alignment:
| Q |
137 |
tttttctctttctcgaaataacctctttcatagctttagctgaagagctagaaacttttcatcacaaaccatcaagtccacttcatcccccaactaagtc |
236 |
Q |
| |
|
|||||||||| ||| |||||||||||||| | | || || |||||||| |||||| |||||||||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
14675257 |
tttttctcttactccaaataacctctttcgttgtgtttgcggaagagcttgaaactcttcatcacaaaccaacaacaccacttcatcccccaacaaagtc |
14675158 |
T |
|
| Q |
237 |
accgattcataaacc |
251 |
Q |
| |
|
|||| | |||||||| |
|
|
| T |
14675157 |
accggtgcataaacc |
14675143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University