View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_124 (Length: 300)
Name: NF6876A_low_124
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_124 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 5035735 - 5035460
Alignment:
| Q |
20 |
caaacgaggtctttccaccaacaacataactcaagtaaagattattgtgatatttgagttgaatccttgtgaagtgaattttttaattctttaatagata |
119 |
Q |
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| T |
5035735 |
caaacgaggtctttccaccaacaacataactcaagtaaagattattgtgatatttgagttgaatccttgtgaagtgaattttttaattctttaatagata |
5035636 |
T |
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| Q |
120 |
tccttnnnnnnnntctttaatatatgtgctttgtaagttttttatttcacaaacactgctataaaagttattaaattacataaaacaattcattcaaaat |
219 |
Q |
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| T |
5035635 |
tccttaaaaaaaatctttaatatatgtgctttgtaagttttttatttcacaaactctgttataaaagttattaaattacataaaacaattcattcaaaat |
5035536 |
T |
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| Q |
220 |
ttgatagaatgtcttcactcctcgtacttgagattaaagccatcttccacaatttctgattatgctgaacaccaaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5035535 |
ttgatagaatgtcttcactcctcgtacttgagattaaagccatcttccacaatttctgattatgctgaacaccaaa |
5035460 |
T |
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