View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_125 (Length: 300)

Name: NF6876A_low_125
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_125
NF6876A_low_125
[»] chr8 (1 HSPs)
chr8 (1-292)||(42138675-42138966)


Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 42138966 - 42138675
Alignment:
Q  1 tcagttagctgcagtatgaacattattgttcacttgtattaatttgtattattttgtgtgtttatgagttcctatgaaatttttgttgtgtaaatgatac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42138966 tcagttagctgcagtatgaacattattgttcacttgtattaatttgtattattttttgtgtttatgagttcctatgaaatttttgttgtgtaaatgatac 42138867  T
Q  101 agaatctgcacaagggacggttctttggacttcagaagataggcacaaaaagaattccagagcatataaggtctcacaaacagactaatcttgaaagagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42138866 agaatctgcacaagggacggttctttggacttcagaagataggcacaaaaagaattccagagcatataaggtctcacaaacagactaatcttgaaagagc 42138767  T
Q  201 aaaggcatcactgctgctagcttcgctgcctaagtctttaccttgtagaaataagtatgttgaagtttaacatggttttttaacatttcatt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42138766 aaaggcatcactgctgctagcttcgctgcctaagtctttaccttgtagaaataagtatgttgaagtttaacatggttttttaacatttcatt 42138675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University