View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_130 (Length: 298)
Name: NF6876A_low_130
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_130 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 38867874 - 38867581
Alignment:
| Q |
9 |
gcatgaggttggtttcacagtggctcaatagtgctattctttccttttgccaattgtaattaaaaaactgaaaagtaaaataatactccatatttctaga |
108 |
Q |
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| T |
38867874 |
gcatgaggttggtttcacagtggctcaatagtgctattctttccttttgccaattgtaattaaaaaactgaaaagtaaaatgatactccatatttctaga |
38867775 |
T |
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| Q |
109 |
ttgaaaggggttgaatgagtgttatttgatg---------nnnnnnnnngctgtttcattcttttgaagcatgaacttctcaaactgtatgtattttatt |
199 |
Q |
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| T |
38867774 |
ttgaaaggggttgaatgagtgttatttgatgtttttttttttttttttggctgtttcatttttttgaagcaggaacttctgatattgtatgtattttatt |
38867675 |
T |
|
| Q |
200 |
caactactatttactatttagtttcattcttctg-aatagacccttcacagttcacacagacattcaccatatcattgccttgattttcttcga |
292 |
Q |
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| T |
38867674 |
caactactatttactatttagtttcattcttctgaaatagacccttcacagttcacacagacactcaccatatcattgccttgattttgttcga |
38867581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 38598804 - 38598698
Alignment:
| Q |
27 |
agtggctcaatagtgctattctttccttttgccaattgtaattaaaaaactgaaaagtaaaataatactccatatttctagattgaaaggggttgaatga |
126 |
Q |
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|||| |||||||||||||| |||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
38598804 |
agtgactcaatagtgctatacttttcttttgccaattgtcattaaagaactgaaaagtgaaataatactccatattgttagattgaaaggggttgaatga |
38598705 |
T |
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| Q |
127 |
gtgttat |
133 |
Q |
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| T |
38598704 |
gtgttat |
38598698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 39953726 - 39953790
Alignment:
| Q |
66 |
aattaaaaaactgaaaagtaaaataatactccatatttctagattgaaaggggttgaatgagtgt |
130 |
Q |
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| T |
39953726 |
aattaaagaactgaaaagtgaaataatactccatattgctagattgaaaggggttgaatgagtgt |
39953790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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