View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_133 (Length: 296)
Name: NF6876A_low_133
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_133 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 48833999 - 48833718
Alignment:
| Q |
15 |
atcacgattaggtatcaaagacaccgttgacaaaccaaatccaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtat |
114 |
Q |
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| T |
48833999 |
atcaggattaggtatcaaagacaccgttgacaaaccaaattcaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtat |
48833900 |
T |
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| Q |
115 |
ggcacaaaaagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgaagccaatgatattataacaccagctc |
214 |
Q |
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| T |
48833899 |
ggcacaaaaagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgatgccaatgatattataacaccagctc |
48833800 |
T |
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| Q |
215 |
gtacatcaaatcctatgtgaaacttccaattggcccagctagatccatagataaatatataatatatgttagtctctctaaa |
296 |
Q |
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| T |
48833799 |
gtacatcaaatcctatgtgaaacttccaattggcccagctagatccataaataaatatataatatatgttagtctctctaaa |
48833718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 48790198 - 48790434
Alignment:
| Q |
15 |
atcacgattaggtatcaaagacaccgttgacaaaccaaatccaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtat |
114 |
Q |
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| T |
48790198 |
atcacggttgggtatcaaagacacagtcgatagaccaaatccaaactcaccagaatcgaaaaatgtcttaaagtaaaattcttctgttggatcttggtat |
48790297 |
T |
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| Q |
115 |
ggcacaaaaagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgaagccaatgatattataacaccagctc |
214 |
Q |
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| T |
48790298 |
ggcacaaacaactcagaaatgtaccctttgtataatactctacgatatatgtgcttctctagatcataaatagatgcaagggatattacaataccagctc |
48790397 |
T |
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| Q |
215 |
gtacatcaaatcctatgtgaaacttccaattggccca |
251 |
Q |
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| T |
48790398 |
gtacatcaaatcctatatgaaacttccaattggccca |
48790434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 15825730 - 15825965
Alignment:
| Q |
16 |
tcacgattaggtatcaaagacaccgttgacaaaccaaatccaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtatg |
115 |
Q |
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| T |
15825730 |
tcacgattaggtatcaaagaaacagtagatcgaccaaatccatactctccagcatcgaaaaatgtcttaaagtaaaactcttctgttggatcttggtatg |
15825829 |
T |
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| Q |
116 |
gcacaaaaagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgaagccaatgatattataacaccagctcg |
215 |
Q |
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| T |
15825830 |
gcacaaacaactcagaaatataccctttgtataatactctacgagatttgtgtttttcaaggtcgtaaatagatgcaagtgatattataataccagctcg |
15825929 |
T |
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| Q |
216 |
tacatcaaatcctatgtgaaacttccaattggccca |
251 |
Q |
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| T |
15825930 |
tacatcaaatcctatatgaaacttccagttggccca |
15825965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 48816499 - 48816738
Alignment:
| Q |
15 |
atcacgattaggtatcaaagacaccgttgacaaaccaaatccaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtat |
114 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || || | ||| ||||| || |
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| T |
48816499 |
atcacgattaggtatcaaagacaccgttgacagaccaaatccaaactctccagaatcaaagaaagtcttaaagtaaaactcttcggttgggtcttgataa |
48816598 |
T |
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| Q |
115 |
ggcacaaaaagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgaagccaatgatattataacaccagctc |
214 |
Q |
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| T |
48816599 |
ggcacaaatagctcggaaatgtagcctttgtagagtacacggcgagacttatgtttctctagatcgtaaatagatgcaagtgatatcactataccagctc |
48816698 |
T |
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| Q |
215 |
gtacatcaaatcctatgtgaaacttccaattggcccagct |
254 |
Q |
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| T |
48816699 |
gtacatcaaatcctatatgaaacttccagttggcccagct |
48816738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 48807940 - 48808106
Alignment:
| Q |
15 |
atcacgattaggtatcaaagacaccgttgacaaaccaaatccaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtat |
114 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| || | ||| ||||| || |
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| T |
48807940 |
atcacgattaggtatcaaagacaccgttgacagggcaaatccaaactctccagaatcaaagaaagtcttaaagtaaaattcttcggttgggtcttgataa |
48808039 |
T |
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| Q |
115 |
ggcacaaaaagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgta |
182 |
Q |
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| T |
48808040 |
ggcacaaatagctcggaaatgta-gctttgtagagtacacgacgaaacttgtgtttctctatatcgta |
48808106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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