View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_134 (Length: 296)
Name: NF6876A_low_134
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_134 |
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| [»] scaffold0125 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 21843865 - 21843617
Alignment:
| Q |
1 |
aaccggctaaatgcagatagcagaacagcacaacaataaaaaacaaccaaggatttagcaacataaaaaggttaannnnnnnnncaaatacccattatta |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21843865 |
aaccggctaaatgcagatagcagaacagcataacaataaaaatcaaccaaggatttagcaacataaaaaggttaatttttttt-caaatacccattatta |
21843767 |
T |
|
| Q |
101 |
gaaacnnnnnnncc-tatcagaaatcaacnnnnnnnngtcactacataaactcaatgaagacccaaataatcaaaacaacaaaaacataatctagaccta |
199 |
Q |
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||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21843766 |
gaaacaaaaaaaccctatcagaaatcaacaaaaaaa-gtcactacataaactcaatgaagacccaaataatcaaaacaacaaaaacataatctagatcta |
21843668 |
T |
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| Q |
200 |
aatagatatcttcaaagaatacccaaaaacaagaatcaaaagggaatttct |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21843667 |
aatagatatcttcaaagaatacccaaaaacaagaatcaaaagggaatttct |
21843617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 19987 - 20235
Alignment:
| Q |
1 |
aaccggctaaatgcagatagcagaacagcacaacaataaaaaacaaccaaggatttagcaacataaaaaggttaannnnnnnnncaaatacccattatta |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
19987 |
aaccagctaaatgcagatagcagaacagcacaacaataaaaatcaaccaaggatttagcaacataacaaggttaatttttttt-caaatacccattatta |
20085 |
T |
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| Q |
101 |
gaaacnnnnnnncc-tatcagaaatcaacnnnnnnnngtcactacataaactcaatgaagacccaaataatcaaaacaacaaaaacataatctagaccta |
199 |
Q |
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| T |
20086 |
gaaacaaaaaaaccctatcaaaaatcaacaaaaaaa-gtcactacataaactcaatgaagacccaaataatcaaaacaacaaaaacataatctagaccta |
20184 |
T |
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| Q |
200 |
aatagatatcttcaaagaatacccaaaaacaagaatcaaaagggaatttct |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20185 |
aatagatatcttcaaagaatacccaaaaacaagaatcaaaagggaatttct |
20235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 10660190 - 10660080
Alignment:
| Q |
137 |
gtcactacataaactcaatgaagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaatc |
236 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10660190 |
gtcagtacataaactcaatgtagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaaaaatc |
10660091 |
T |
|
| Q |
237 |
aaaagggaatt |
247 |
Q |
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||||||||||| |
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| T |
10660090 |
aaaagggaatt |
10660080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 10874335 - 10874225
Alignment:
| Q |
137 |
gtcactacataaactcaatgaagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaatc |
236 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10874335 |
gtcagtacataaactcaatgtagacccaaataatcaaaacaacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaaaaatc |
10874236 |
T |
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| Q |
237 |
aaaagggaatt |
247 |
Q |
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||||||||||| |
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| T |
10874235 |
aaaagggaatt |
10874225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 10660647 - 10660573
Alignment:
| Q |
1 |
aaccggctaaatgcagatagcagaacagcacaacaataaaaaacaaccaaggatttagcaacataaaaaggttaa |
75 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
10660647 |
aaccggctaaatgcagatagcataatagcacaacaataaaaaccaaccaaggatttaacaacataaaaaggttaa |
10660573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 10874792 - 10874718
Alignment:
| Q |
1 |
aaccggctaaatgcagatagcagaacagcacaacaataaaaaacaaccaaggatttagcaacataaaaaggttaa |
75 |
Q |
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|||||||||||||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
10874792 |
aaccggctaaatgcagatagcataatagcacaacaataaaaaccaaccaaggatttaacaacataaaaaggttaa |
10874718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 12818505 - 12818615
Alignment:
| Q |
137 |
gtcactacataaactcaatgaagacccaaataatcaaaac--aacaaaaacataatctagacctaaatagatatcttcaaagaatacccaaaaacaagaa |
234 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| || |||||| ||||||| ||| || ||||||||||||||||||||||| ||||| |
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| T |
12818505 |
gtcactacataaactcaatgaagacccaaacaatcaaaacaaaaaaaaaacgtaatctatgtttaa--agttatcttcaaagaatacccaaaaaaaagaa |
12818602 |
T |
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| Q |
235 |
tcaaaagggaatt |
247 |
Q |
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||||||||||||| |
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| T |
12818603 |
tcaaaagggaatt |
12818615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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