View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_146 (Length: 291)
Name: NF6876A_low_146
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_146 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 23853420 - 23853152
Alignment:
| Q |
17 |
ggacatcaacatagataccaattgactagagttcaattacatagagactcaattgtgtttgaatataaggtgtccccaaatataaataagtgctcaagat |
116 |
Q |
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| T |
23853420 |
ggacatcaacatagataccaattaactagagttcaattacatagagactcaattgtgtttgaatataaggtgtccccaaatataaataagtgctcaagat |
23853321 |
T |
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| Q |
117 |
atgcacggaaatagaacatcaacatgactcgttccaaatataaaaacgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853320 |
atgcacggaaatagaacatcaacatgactcgttccaaatataaaaatgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggtt |
23853221 |
T |
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| Q |
217 |
gtgtcacggttgtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatag |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853220 |
gtgtcacggttgtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatag |
23853152 |
T |
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