View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_147 (Length: 290)
Name: NF6876A_low_147
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_147 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 37129341 - 37129099
Alignment:
| Q |
6 |
aggaatatggtttttgaaatataaatatgagatgacgtttttggcannnnnnn---------aattagtgttgcagggtgtaaccagaaataaaggatgt |
96 |
Q |
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| T |
37129341 |
aggaatatggtttttgaaatataaatatgatatgacgtttttggcatttttttttgtttttgaattagtgttggagggtgtaaccagaagtaaaggatgt |
37129242 |
T |
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| Q |
97 |
aaatagcacaaatgagaatatattttgtgtttagacggtttcatgtatccttnnnnnnnnntgatgaaaattgctcttcttccttnnnnnnntgttcact |
196 |
Q |
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| T |
37129241 |
aaatagcacaaatgggaatatattttgtgttcagacggtttcatgaatccttaaaaaaaaatgatgaaaattactctttttcctt-aaaaaatgttcact |
37129143 |
T |
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| Q |
197 |
ttcacgtaaattgattaaaatatacccatgtgagttaattcatg |
240 |
Q |
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| T |
37129142 |
tccacgtgaattaattaaaatatctccacgtgagttaattcatg |
37129099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 37121166 - 37121080
Alignment:
| Q |
59 |
aattagtgttgcagggtgtaaccagaaataaaggatgtaaatagcacaaatgagaat--atattttgtgtttagacggtttcatgta |
143 |
Q |
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| T |
37121166 |
aattagtattgaagggtgtaaccagaaataaaggatataaatagcacaaatgagaatatatattttgtgttgagacggtttaatgta |
37121080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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