View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_148 (Length: 289)

Name: NF6876A_low_148
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_148
NF6876A_low_148
[»] chr1 (5 HSPs)
chr1 (1-131)||(29442464-29442597)
chr1 (203-283)||(29442311-29442391)
chr1 (1-103)||(29424125-29424226)
chr1 (1-53)||(29452537-29452589)
chr1 (51-88)||(29452466-29452503)
[»] chr2 (3 HSPs)
chr2 (43-100)||(10354101-10354157)
chr2 (9-67)||(9283343-9283404)
chr2 (30-64)||(10336751-10336785)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 29442597 - 29442464
Alignment:
Q  1 gtaacatagagaggattccggtaagtatctccggcggaagatccgccattggaaggaaggaaggaaggttctagttagggt-------ttagggtttttc 93  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    |||||||||||||||||       ||||||||||||    
T  29442597 gtaacagagagaggattccggtaagtatctccggcggaagatccaccattggaaggaagg----aaggttctagttagggtttaggccttagggtttttc 29442502  T
Q  94 ctttcttcctctccatgtacgacccaaatgcaacacag 131  Q
    |||||||||||||| |||||||||||||||||||||||    
T  29442501 ctttcttcctctccttgtacgacccaaatgcaacacag 29442464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 29442391 - 29442311
Alignment:
Q  203 cttgattacgtgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttatt 283  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29442391 cttgattacatgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttatt 29442311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 29424125 - 29424226
Alignment:
Q  1 gtaacatagagaggattccggtaagtatctccggcggaagatccgccattggaaggaaggaaggaaggttctagttagggtttagggtttttcctttctt 100  Q
    |||||| ||||||||||||||| |||||||||||||||||||||| |||||| ||   |||||  ||||||||| |||||||||| ||||||| ||||||    
T  29424125 gtaacagagagaggattccggtgagtatctccggcggaagatccgtcattgg-agcttggaagttaggttctagctagggtttagagtttttcatttctt 29424223  T
Q  101 cct 103  Q
    |||    
T  29424224 cct 29424226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29452589 - 29452537
Alignment:
Q  1 gtaacatagagaggattccggtaagtatctccggcggaagatccgccattgga 53  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  29452589 gtaacagagagaggataccggtaagtatctccggcggaagatccgccattgga 29452537  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 29452503 - 29452466
Alignment:
Q  51 ggaaggaaggaaggaaggttctagttagggtttagggt 88  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  29452503 ggaaggaaggaaggaaggttgtagctagggtttagggt 29452466  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 10354101 - 10354157
Alignment:
Q  43 ccgccattggaaggaaggaaggaaggttctagttagggtttagggtttttcctttctt 100  Q
    ||||||||| |||||||||| ||||||||| | |||||||||||||||||| ||||||    
T  10354101 ccgccattgtaaggaaggaatgaaggttct-gctagggtttagggtttttcatttctt 10354157  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 9283404 - 9283343
Alignment:
Q  9 gagaggattccggtaagtatctccggcggaagatc---cgccattggaaggaaggaaggaag 67  Q
    |||| |||| ||| |||||| ||||||||||||||   ||||||||||||||||||||||||    
T  9283404 gagaagatttcggcaagtatgtccggcggaagatcggacgccattggaaggaaggaaggaag 9283343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 10336751 - 10336785
Alignment:
Q  30 tccggcggaagatccgccattggaaggaaggaagg 64  Q
    |||||||||||||||||||||| ||||||||||||    
T  10336751 tccggcggaagatccgccattgtaaggaaggaagg 10336785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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