View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_15 (Length: 464)
Name: NF6876A_low_15
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 1786259 - 1786713
Alignment:
| Q |
1 |
tcaatgggaaggttgtgtcataagagttcttatcattatttgtagtttctgtcaaattgataatgatactccgcttataagatttgactagacttttatg |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1786259 |
tcaatgggaagtttgtgtcataagagttcttatcattatttgtagtttctgtcaaattgataatgatactccgcttataagatttgactagacttttatg |
1786358 |
T |
|
| Q |
101 |
ttattgatgttattagttcaatggttctttatagcttaggcaatttgagtctctatccaattttctataccactaattgacaaaacaagtatcagaactc |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1786359 |
ttattgatgctattagttcaatggttctttatagcttaggcaatttgagtctctatccaattttctataccactaattgacaaaacaagtatcagaactc |
1786458 |
T |
|
| Q |
201 |
ttgcttcaaggttcactttttagctgagatttttcaatcttgcaatattgttttctttaaaaatgttggttgagttttagtagtggtattgaaaatctgt |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1786459 |
ttgcttcaaggttcactttttagctcagatttttcaatcttgcaatattgttttctttaaaaatgttggttgagttttagtaatggtattgaaaatctgt |
1786558 |
T |
|
| Q |
301 |
t--tgtttaggaggaatttcatgtttggggttgggaattttgtgtttcagacttagattatgatgttaattggattggctcagcactattgtcactttct |
398 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
1786559 |
ttatgtttaggaggaatttcatgtttggggttgggaattttgtgtttcagacttagattatgatgttaattggattggctcagcactaatttcactttct |
1786658 |
T |
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| Q |
399 |
ctgaatttggtccacacatctctgacgttatgttaaactttctttcattcatctc |
453 |
Q |
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| T |
1786659 |
ctgaaattggtccacacatctctgacgttatgttaaactttctttcattcatctc |
1786713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 103 - 278
Target Start/End: Complemental strand, 27003386 - 27003211
Alignment:
| Q |
103 |
attgatgttattagttcaatggttctttatagcttaggcaatttgagtctctatccaattttctataccactaattgacaaaacaagtatcagaactctt |
202 |
Q |
| |
|
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27003386 |
attgatgtcattaatttaatggttctttatagcttaggcaatttgagtctctatccaattttctataccactaattgacaaaacaggtatcagaactctt |
27003287 |
T |
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| Q |
203 |
gcttcaaggttcactttttagctgagatttttcaatcttgcaatattgttttctttaaaaatgttggttgagtttt |
278 |
Q |
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|||| |||||||||||||||||| | ||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27003286 |
gctttaaggttcactttttagctcaaatttttcgatcttgcaatattgttttctttaaaattgttggttgagtttt |
27003211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 439
Target Start/End: Complemental strand, 40178974 - 40178928
Alignment:
| Q |
393 |
ctttctctgaatttggtccacacatctctgacgttatgttaaacttt |
439 |
Q |
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||||||||||||||||| |||||||||||||| ||||| |||||||| |
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| T |
40178974 |
ctttctctgaatttggttcacacatctctgacattatgctaaacttt |
40178928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12078356 - 12078389
Alignment:
| Q |
1 |
tcaatgggaaggttgtgtcataagagttcttatc |
34 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
12078356 |
tcaatgggaaggttgtgtcataagagttcttatc |
12078389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 103 - 278
Target Start/End: Original strand, 35537851 - 35538026
Alignment:
| Q |
103 |
attgatgttattagttcaatggttctttatagcttaggcaatttgagtctctatccaattttctataccactaattgacaaaacaagtatcagaactctt |
202 |
Q |
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|
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35537851 |
attgatgtcattaatttaatggttctttatagcttaggcaatttgagtctctatccaattttctataccactaattgacaaaacaggtatcagaactctt |
35537950 |
T |
|
| Q |
203 |
gcttcaaggttcactttttagctgagatttttcaatcttgcaatattgttttctttaaaaatgttggttgagtttt |
278 |
Q |
| |
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||||| ||||||||||||||||| | ||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35537951 |
gcttccaggttcactttttagctcaaatttttcgatcttgcaatattgttttctttaaaattgttggttgagtttt |
35538026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 6226336 - 6226402
Alignment:
| Q |
275 |
ttttagtagtggtattgaaaatctgttt--gtttaggaggaatttcatgtttggggttgggaatttt |
339 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6226336 |
ttttagtaatggtattgaaaatctgtttatgtttaggaggaatttcatgtttggggttgggaatttt |
6226402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 450
Target Start/End: Original strand, 6226402 - 6226488
Alignment:
| Q |
368 |
ttggattggctcagcactattgtc----actttctctgaatttggtccacacatctctgacgttatgttaaactttctttcattcat |
450 |
Q |
| |
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||||||||||||||||||| | || |||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||| |
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| T |
6226402 |
ttggattggctcagcactaatttcaccaactttctctgaatttggttcacacatttctgacattatgttaagctttctttcattcat |
6226488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 47104927 - 47104865
Alignment:
| Q |
35 |
attatttgtagtttctgtcaaattgataatgatactccgcttataagatttgactagactttt |
97 |
Q |
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||||||||||| |||| |||| ||||||||||||| | |||| ||||||||| ||||||||| |
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| T |
47104927 |
attatttgtagcttctttcaatttgataatgatacccaacttacaagatttgaatagactttt |
47104865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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