View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_151 (Length: 287)
Name: NF6876A_low_151
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_151 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 161 - 287
Target Start/End: Complemental strand, 30574011 - 30573885
Alignment:
| Q |
161 |
aaaaaactcagtatgtgacctaaggacagactaatcagaaaggccaaatcccacatcgacttacggagacccttttaaagttagagaaaaactctatatg |
260 |
Q |
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| T |
30574011 |
aaaaaactcaatatctgacctaaggaccgactaatccgaaaggtcaaatcccacatcgacttgtggggacccttttaaagttagagcaaaactctatatg |
30573912 |
T |
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| Q |
261 |
gacaatcacaccgaactgctgtggaaa |
287 |
Q |
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| T |
30573911 |
gactatcccaccgaactgctgtggaaa |
30573885 |
T |
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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 19616822 - 19616874
Alignment:
| Q |
17 |
gacatcacttcctaattatatttttaataactcaatattaataattaaaaact |
69 |
Q |
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| T |
19616822 |
gacatcacttcctaattatatttttaataactcaatattaataattaaaaact |
19616874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 19617809 - 19617861
Alignment:
| Q |
61 |
ttaaaaacttcacttcctaattatgtatatattttttagggggttcgtacttca |
114 |
Q |
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| T |
19617809 |
ttaaaaacttcacttcctaattatgtatatatttttta-ggggttcgtacttca |
19617861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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