View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_152 (Length: 287)
Name: NF6876A_low_152
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_152 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 43099081 - 43098816
Alignment:
| Q |
14 |
agatcaaagtgatcatttacccaaatatatttcttgttaaaaaactgcatttgtacagtatacttttatagaaatgcatgttcaactatatactaatgta |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43099081 |
agattaaagtgatcatttacccaaatatatttcttgttaaaaaactgcatttgtacagtatacttttatagaaatgcatgttcaactata--ctaatgta |
43098984 |
T |
|
| Q |
114 |
agtgtcatcaaatggtgagctagacctgacatacaagttttagacagtagtactatatgattttgcattttgcaagctgctgttagtctgttacatgttc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43098983 |
agtgtcatcaaatggtgagctagacctgacatacaagttttagacggtagtactatatgattttgcattttgcaagcagctgttagtctgttacatgttc |
43098884 |
T |
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| Q |
214 |
tagttttcgaactttattaaatgctgaccaaacttgtctcttttgcctgacattgttacagctagttt |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43098883 |
tagttttcgaactttattaaatgctgaccaaacttgtctcttttgcctgacattgttacagctagttt |
43098816 |
T |
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