View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_157 (Length: 285)

Name: NF6876A_low_157
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_157
NF6876A_low_157
[»] chr2 (1 HSPs)
chr2 (1-270)||(12689707-12689973)
[»] chr1 (3 HSPs)
chr1 (45-168)||(19749769-19749893)
chr1 (169-230)||(20963514-20963576)
chr1 (171-230)||(15157945-15158002)
[»] chr5 (3 HSPs)
chr5 (45-168)||(26863445-26863569)
chr5 (169-230)||(20679805-20679866)
chr5 (163-230)||(23421574-23421640)
[»] chr6 (2 HSPs)
chr6 (173-226)||(4282658-4282711)
chr6 (173-229)||(22622465-22622519)
[»] chr7 (1 HSPs)
chr7 (171-230)||(550543-550601)
[»] chr3 (1 HSPs)
chr3 (173-230)||(20012350-20012405)
[»] scaffold0013 (1 HSPs)
scaffold0013 (171-227)||(135652-135706)
[»] chr8 (3 HSPs)
chr8 (171-227)||(2236-2290)
chr8 (171-230)||(14673570-14673628)
chr8 (173-229)||(25548139-25548193)
[»] chr4 (1 HSPs)
chr4 (171-227)||(722943-722998)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 12689973 - 12689707
Alignment:
Q  1 ttcgtgtgtagaccttcctgaggacctgaacgtatgaataatggtgcacatggttgtcgatgcctccgtagatgacgttgatattgtttctcggccgcat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12689973 ttcgtgtgtagaccttcatgaggacctgaacgtatgaataatggtgcacatggttgtcgatgcctccgtagatgacgttgatattgtttctcggccgcat 12689874  T
Q  101 cacaagtgatagggtttgcggctgcgacatcaacttcatgatcacctcggtataattgattaggtttattagggtttccaaatcacgattcgtgattcag 200  Q
    ||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  12689873 caccagtgatggggtttgcggctgcgacatcaacgtcatgatcacctcggtataattgattaggt---ttagggtttccaaatcacgattcgtgattcag 12689777  T
Q  201 aaaacgcggtcaaggttagttttacctcttgttaaaagtacaataatcgaattagaattagggtttgtat 270  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12689776 aaaacacggtcaaggttagttttacctcttgttaaaagtacaataatcaaattagaattagggtttgtat 12689707  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 19749893 - 19749769
Alignment:
Q  45 tgcacatggttgtcgatgcctccgtagatgacgttgatattgtttctcggccgcatcacaagtgatagggtttgcggctgcgaca-tcaacttcatgatc 143  Q
    |||||||||||||||||||||||| ||||||||||  ||||| |||| ||| ||||||  |  ||| |||||||||||||||||| |||||  |||||||    
T  19749893 tgcacatggttgtcgatgcctccgcagatgacgttcgtattgcttcttggcggcatcatcaacgatggggtttgcggctgcgacattcaacgccatgatc 19749794  T
Q  144 acctcggtataattgattaggttta 168  Q
     |||||| |||||||||||||||||    
T  19749793 ccctcggcataattgattaggttta 19749769  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 20963514 - 20963576
Alignment:
Q  169 ttagggtttccaaatcacgattc-gtgattcagaaaacgcggtcaaggttagttttacctctt 230  Q
    ||||||||||||||||| ||||  | ||||||||||||| ||||||||||| |||||||||||    
T  20963514 ttagggtttccaaatcaagattttgcgattcagaaaacgtggtcaaggttaattttacctctt 20963576  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 15157945 - 15158002
Alignment:
Q  171 agggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctctt 230  Q
    ||||||||||||||||||||  ||||||||||| || |||| ||||||||||||||||||    
T  15157945 agggtttccaaatcacgattt-tgattcagaaa-cgtggtcgaggttagttttacctctt 15158002  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 26863445 - 26863569
Alignment:
Q  45 tgcacatggttgtcgatgcctccgtagatgacgttgatattgtttctcggccgcatcacaagtgatagggtttgcggctgcgaca-tcaacttcatgatc 143  Q
    ||||||||||||||||||||||| |||||||||||  ||||| |||| ||| ||||||  |  ||| |||||||| ||||||||| |||||  |||||||    
T  26863445 tgcacatggttgtcgatgcctccatagatgacgttcgtattgcttcttggcggcatcatcaacgatggggtttgcagctgcgacattcaacgccatgatc 26863544  T
Q  144 acctcggtataattgattaggttta 168  Q
     |||||| |||||||||||||||||    
T  26863545 ccctcggcataattgattaggttta 26863569  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 20679805 - 20679866
Alignment:
Q  169 ttagggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctctt 230  Q
    ||||||||||||| |||||||| | ||||||||||| | |||||||||||||||||||||||    
T  20679805 ttagggtttccaagtcacgatttgagattcagaaaatgtggtcaaggttagttttacctctt 20679866  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 23421640 - 23421574
Alignment:
Q  163 ggtttattagggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctctt 230  Q
    ||||| ||||||||||||||||| |||| | ||||||| ||||| |||||||||| ||||||||||||    
T  23421640 ggtttcttagggtttccaaatcatgatttgcgattcag-aaacgtggtcaaggtttgttttacctctt 23421574  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 4282658 - 4282711
Alignment:
Q  173 ggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacc 226  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||    
T  4282658 ggtttccaaatcacgatttgtgatccagaaaacgtggtcaaggttagttttacc 4282711  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 22622465 - 22622519
Alignment:
Q  173 ggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctct 229  Q
    ||||||||||||||||||  ||||||||||| || |||| |||||||||||||||||    
T  22622465 ggtttccaaatcacgattt-tgattcagaaa-cgtggtcgaggttagttttacctct 22622519  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 550543 - 550601
Alignment:
Q  171 agggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctctt 230  Q
    ||||||||| |||||||||| | |||||||||| || |||||||||||||||||| ||||    
T  550543 agggtttccgaatcacgatttgcgattcagaaa-cgtggtcaaggttagttttacgtctt 550601  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 20012350 - 20012405
Alignment:
Q  173 ggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctctt 230  Q
    ||||||||||||||||||  ||||||||||| || |||| ||||||||||||||||||    
T  20012350 ggtttccaaatcacgattt-tgattcagaaa-cgtggtcgaggttagttttacctctt 20012405  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 135652 - 135706
Alignment:
Q  171 agggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacct 227  Q
    ||||||||||||||||||||  |||||||| ||||| |||| |||||||||||||||    
T  135652 agggtttccaaatcacgatt-ttgattcag-aaacgtggtcgaggttagttttacct 135706  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 2236 - 2290
Alignment:
Q  171 agggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacct 227  Q
    ||||||||||||||||||||  |||||||| ||||| |||| |||||||||||||||    
T  2236 agggtttccaaatcacgatt-ttgattcag-aaacgtggtcgaggttagttttacct 2290  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 14673628 - 14673570
Alignment:
Q  171 agggtttccaaatcac-gattcgtgattcagaaaacgcggtcaaggttagttttacctctt 230  Q
    |||||||||||||||| ||||| ||||||||||| || |||| ||||||||||||||||||    
T  14673628 agggtttccaaatcacagattc-tgattcagaaa-cgtggtcgaggttagttttacctctt 14673570  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 25548193 - 25548139
Alignment:
Q  173 ggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctct 229  Q
    ||||||||||||||||||  ||||||||||| || |||| |||||||||||||||||    
T  25548193 ggtttccaaatcacgattt-tgattcagaaa-cgtggtcgaggttagttttacctct 25548139  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 722998 - 722943
Alignment:
Q  171 agggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacct 227  Q
    ||||||| | |||||||||| ||||||| |||| || ||||||||||||||||||||    
T  722998 agggtttacgaatcacgatttgtgattcggaaa-cgtggtcaaggttagttttacct 722943  T

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