View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_159 (Length: 283)
Name: NF6876A_low_159
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_159 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 16009346 - 16009090
Alignment:
| Q |
17 |
gacatcaccaagatggttatcaggatccaactcagcaccttttatacctttcaatttttaagtccttaggccaataccactaagccacaatataacttta |
116 |
Q |
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| T |
16009346 |
gacatcaccaagatggttatcaggatccaactcagcacctt--atac------------aagtccttgggccaataccactaagccacaatataacttta |
16009261 |
T |
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| Q |
117 |
cataataattttaatagatcacatgtttaaatttatttactcttaggctatgcctatataatt----nnnnnnnnnnnnacaaaaggctattgcatgtat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| |
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| T |
16009260 |
cataataattttaatagatcacatgtttaaatttatttactcttaggctatgcctatataattcacacacacaaaaaaaaaaaaaggctattgcatatat |
16009161 |
T |
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| Q |
213 |
tacacaattttgtatattcatttacagatatgacattgaaatatatgggatactgatatactccatgttga |
283 |
Q |
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| T |
16009160 |
tacacaattttgtatattcatttacagatatgacattgaaatatatgggatactgatatactccatgttga |
16009090 |
T |
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