View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_160 (Length: 282)

Name: NF6876A_low_160
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_160
NF6876A_low_160
[»] chr8 (9 HSPs)
chr8 (29-280)||(32166640-32166890)
chr8 (92-280)||(33897618-33897807)
chr8 (100-280)||(35574645-35574827)
chr8 (99-187)||(29969153-29969241)
chr8 (230-282)||(12736074-12736126)
chr8 (135-185)||(6803876-6803926)
chr8 (221-282)||(6630542-6630603)
chr8 (94-185)||(6630316-6630406)
chr8 (242-282)||(29969129-29969169)
[»] chr7 (18 HSPs)
chr7 (92-282)||(34891414-34891605)
chr7 (92-282)||(3191570-3191760)
chr7 (100-282)||(42012690-42012872)
chr7 (100-262)||(31171316-31171480)
chr7 (210-280)||(32138891-32138961)
chr7 (100-278)||(31152738-31152919)
chr7 (221-278)||(32962398-32962455)
chr7 (230-282)||(23944096-23944148)
chr7 (225-282)||(34891380-34891437)
chr7 (138-257)||(22593597-22593722)
chr7 (107-265)||(8900670-8900831)
chr7 (94-185)||(33362347-33362436)
chr7 (226-264)||(7463864-7463902)
chr7 (232-282)||(33362415-33362465)
chr7 (233-282)||(8354395-8354444)
chr7 (210-246)||(27651379-27651415)
chr7 (230-282)||(27651513-27651564)
chr7 (210-262)||(29152350-29152402)
[»] chr5 (17 HSPs)
chr5 (99-282)||(7113617-7113804)
chr5 (101-282)||(40483739-40483922)
chr5 (213-282)||(2243319-2243388)
chr5 (210-282)||(973111-973183)
chr5 (99-187)||(2243249-2243335)
chr5 (213-280)||(14138548-14138615)
chr5 (86-187)||(17739908-17740009)
chr5 (226-264)||(972845-972883)
chr5 (210-259)||(7215322-7215371)
chr5 (86-186)||(7215230-7215329)
chr5 (210-282)||(17736757-17736829)
chr5 (221-265)||(37077663-37077707)
chr5 (81-196)||(39730369-39730484)
chr5 (226-278)||(39808239-39808291)
chr5 (230-279)||(39730312-39730361)
chr5 (230-282)||(22780347-22780399)
chr5 (210-282)||(37077760-37077832)
[»] chr2 (16 HSPs)
chr2 (92-278)||(13712757-13712945)
chr2 (100-278)||(9050132-9050313)
chr2 (210-282)||(16576248-16576320)
chr2 (213-282)||(16863459-16863528)
chr2 (100-262)||(38576791-38576955)
chr2 (132-189)||(38576707-38576764)
chr2 (232-280)||(2909844-2909892)
chr2 (86-279)||(16576290-16576486)
chr2 (100-170)||(9931337-9931406)
chr2 (221-282)||(38576940-38577001)
chr2 (100-184)||(25606423-25606506)
chr2 (221-264)||(34176654-34176697)
chr2 (214-280)||(35370402-35370468)
chr2 (92-185)||(28282699-28282791)
chr2 (210-278)||(25606366-25606434)
chr2 (210-262)||(28282824-28282876)
[»] chr4 (12 HSPs)
chr4 (92-268)||(25234217-25234393)
chr4 (86-264)||(25062361-25062544)
chr4 (165-282)||(15131578-15131698)
chr4 (136-282)||(54000050-54000199)
chr4 (216-279)||(4115389-4115452)
chr4 (221-280)||(20512832-20512891)
chr4 (209-282)||(22050851-22050924)
chr4 (92-185)||(55897600-55897693)
chr4 (226-282)||(54000219-54000275)
chr4 (231-282)||(25062340-25062391)
chr4 (221-282)||(11020084-11020144)
chr4 (94-187)||(22050903-22050995)
[»] chr3 (11 HSPs)
chr3 (124-279)||(39341110-39341268)
chr3 (127-282)||(42091794-42091951)
chr3 (211-282)||(46303371-46303442)
chr3 (86-187)||(54437848-54437949)
chr3 (209-266)||(31758242-31758298)
chr3 (128-185)||(39341283-39341340)
chr3 (210-282)||(34761956-34762028)
chr3 (210-264)||(54437806-54437860)
chr3 (221-278)||(48646423-48646479)
chr3 (230-282)||(20519299-20519351)
chr3 (224-280)||(54437651-54437707)
[»] chr6 (10 HSPs)
chr6 (128-280)||(20068000-20068155)
chr6 (210-279)||(32342600-32342669)
chr6 (179-278)||(23577118-23577219)
chr6 (230-278)||(32047194-32047242)
chr6 (213-259)||(20206481-20206527)
chr6 (213-259)||(22100504-22100550)
chr6 (132-187)||(32047262-32047317)
chr6 (103-157)||(23577068-23577121)
chr6 (138-184)||(26236751-26236797)
chr6 (211-272)||(23577009-23577070)
[»] chr1 (21 HSPs)
chr1 (210-280)||(46080971-46081041)
chr1 (210-278)||(10775163-10775231)
chr1 (210-282)||(34601444-34601516)
chr1 (163-280)||(7997194-7997314)
chr1 (173-262)||(44342055-44342145)
chr1 (94-187)||(3232179-3232271)
chr1 (94-179)||(7104316-7104400)
chr1 (210-282)||(24873765-24873838)
chr1 (210-282)||(24874598-24874671)
chr1 (210-263)||(42819621-42819674)
chr1 (221-282)||(52432672-52432733)
chr1 (210-282)||(12144970-12145039)
chr1 (83-172)||(49897909-49897998)
chr1 (99-172)||(67982-68054)
chr1 (210-282)||(68097-68169)
chr1 (86-145)||(68139-68198)
chr1 (210-282)||(49897870-49897942)
chr1 (231-282)||(3231979-3232030)
chr1 (231-282)||(38839664-38839715)
chr1 (221-282)||(10775028-10775089)
chr1 (234-282)||(3367806-3367854)
[»] scaffold0136 (1 HSPs)
scaffold0136 (226-282)||(36976-37033)
[»] scaffold1743 (1 HSPs)
scaffold1743 (221-280)||(794-853)
[»] scaffold0047 (1 HSPs)
scaffold0047 (221-268)||(62744-62791)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 29 - 280
Target Start/End: Complemental strand, 32166890 - 32166640
Alignment:
Q  29 caatatatgaatgtggttttttcttacatagctgcttccaatcaaagtgtttcttcgaacttcttatcttcttcatttaacatgtgatttacatctcttt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32166890 caatatatgaatgtggttttttcttacatagctgcttccaatcaaagtgtttcttcgaatttcttatcttcttcatttaacatgtgatttacatctcttt 32166791  T
Q  129 tcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatagtttttcttactatcaatta 228  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32166790 -cgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaatgtatgctcatcgatagtttttcttactatcaatta 32166692  T
Q  229 tcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 280  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32166691 tcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgt 32166640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 92 - 280
Target Start/End: Original strand, 33897618 - 33897807
Alignment:
Q  92 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 191  Q
    |||||| |||||||||||||||||||||||||| ||||||||| |||||| ||||||  || |||| ||| ||||||||| | ||||| |||||||||||    
T  33897618 ttatctccttcatttaacatgtgatttacatct-ttttcgttctaaaatctaatcgtgtttatcatcagatgtaaattactctcaattaatcaaggaaaa 33897716  T
Q  192 atgtatgctcatcgata-gtttttc-ttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 280  Q
    ||||| |||| ||||||  |||||| |||||||||||||  |||||||||| || ||||||||| ||||| || ||||| |||||||||||    
T  33897717 atgtaggctcgtcgatatatttttctttactatcaattactattttcatctcaaaaacatcaaaattcttaatttccttcattcaacatgt 33897807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 280
Target Start/End: Complemental strand, 35574827 - 35574645
Alignment:
Q  100 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgta-tg 198  Q
    |||||| ||||| ||||||  |||||||| ||||||||||||||||| || |||||||||| |||||||||||| ||||||||||| ||| |||| |       
T  35574827 ttcattgaacatatgattttaatctcttt-cgttccaaaatcgaatcatagttgtcattagcggtaaattaccctcaattcatcaatgaataatggagac 35574729  T
Q  199 ctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 280  Q
    ||||| ||||  ||||||||||| || | |||  ||||||||||||||||||||||| || |||||||| || |||||||||||    
T  35574728 ctcattgatagggtttttcttacaattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgt 35574645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 29969153 - 29969241
Alignment:
Q  99 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcatt-agaggtaaattacccccaattcatcaagg 187  Q
    ||||||| |||||||||| | ||||||||| ||||||| ||||||||  ||||||||||| || ||||||||| || |||||||||||||    
T  29969153 cttcattcaacatgtgatattcatctcttt-cgttccataatcgaattctacttgtcattaaggggtaaattatccacaattcatcaagg 29969241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 12736074 - 12736126
Alignment:
Q  230 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||| |||||||| ||||||||||||||||||||||||  ||||||||||||    
T  12736074 catttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtga 12736126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 6803926 - 6803876
Alignment:
Q  135 caaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 185  Q
    ||||||| |||| ||||||||||||| |||||||||| |||||||||||||    
T  6803926 caaaatcaaatcctacttgtcattaggggtaaattactcccaattcatcaa 6803876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 6630603 - 6630542
Alignment:
Q  221 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||| |||||||||||||||| ||| ||| |||||||||||||| ||| |||| ||||    
T  6630603 atcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaacaagtga 6630542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 6630406 - 6630316
Alignment:
Q  94 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 185  Q
    ||||| |||||| |||||||| | | |||||| || | || ||||||| |||| ||||||||||||| |||||||||| | |||||||||||    
T  6630406 atctttttcattcaacatgtgttatccatctcctt-catttcaaaatcaaatcctacttgtcattaggggtaaattactctcaattcatcaa 6630316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 29969129 - 29969169
Alignment:
Q  242 aagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||||||||||||||||| || |||| |||||||||||||    
T  29969129 aagaacatcaaacttcttcttccccttcattcaacatgtga 29969169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 92 - 282
Target Start/End: Original strand, 34891414 - 34891605
Alignment:
Q  92 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 191  Q
    ||||||||||||||||||||||||| || |||||||| | |||| ||||||||| ||| ||||||| || ||||||||||||| | |||||||||||| |    
T  34891414 ttatcttcttcatttaacatgtgatctagatctcttt-cattcccaaatcgaattgtatttgtcatgaggggtaaattacccc-agttcatcaaggaaga 34891511  T
Q  192 atgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    || || ||||| |||||    ||||||||||||| | |||||||||| |||| |||||||||||| |||||||||||||| |||||||||||||    
T  34891512 atataggctcaccgatatggttttttcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtga 34891605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 282
Target Start/End: Complemental strand, 3191760 - 3191570
Alignment:
Q  92 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 191  Q
    |||||| |||||||||| |||||||||||||| |||| | || |||||| |||||||| ||| ||| |  ||||||||||| ||||| |||  |||||||    
T  3191760 ttatctccttcatttaagatgtgatttacatcccttt-catttcaaaattgaatcgtatttgacatgaagggtaaattaccgccaatacatggaggaaaa 3191662  T
Q  192 atgtatgctcatcgatagtttt-tcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||  ||||   ||  |||| | ||||||||| ||||  ||||||||| || ||||||||| ||||||||||||||||||||||||||||    
T  3191661 atgtagactcacatatgattttcttttactatcagttattcttttcatctcaaaaacatcaaagttcttcatctcctttattcaacatgtga 3191570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 282
Target Start/End: Original strand, 42012690 - 42012872
Alignment:
Q  100 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 199  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| ||  |||||| || | ||||||| |||||||| |||||||||||||||| |     
T  42012690 ttcatttaagatgtgatttacatct-ttttcgttccaaaatcgaatcatatatgtcatgagggataaatta-ccccaattaatcaaggaaaaatgtaagt 42012787  T
Q  200 tcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||| |||    |||||||||  |||| ||| || ||| |||  ||||||||||||||| |||||||  ||||||||||||||||    
T  42012788 tcatcaatatggttttttcttagaatcagttaccacttttatcacaagaacatcaaactttttcatct-atttattcaacatgtga 42012872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 31171480 - 31171316
Alignment:
Q  100 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 199  Q
    |||||| || ||||||||| ||||||||| |||| || ||||||||| ||||||| |||| ||||||||||||||||||||||||||  | ||||||  |    
T  31171480 ttcattcaaaatgtgatttccatctcttt-cgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtagac 31171382  T
Q  200 -tcatc--gatagtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 262  Q
     |||||    | ||||||||||| | |||||| |||||||||||||| |||||||| |||||||||    
T  31171381 ttcatcattttggtttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcat 31171316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 32138961 - 32138891
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 280  Q
    |||||||||  |||||||| |||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  32138961 tttttcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgt 32138891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 278
Target Start/End: Complemental strand, 31152919 - 31152738
Alignment:
Q  100 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 199  Q
    |||||| || ||||||| | ||||||||| |||| || ||||||||| ||||||| |||| ||||||||||||||||||||||||||  | ||||||  |    
T  31152919 ttcattcaaaatgtgatctccatctcttt-cgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtagac 31152821  T
Q  200 -tcatcgat---agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 278  Q
     |||||  |     |||||| ||| | |||||| |||||||||||||| |||||||| ||||||||| || || |||||||||    
T  31152820 ttcatcattttggttttttcatacaaccaattaccattttcatcttaaaaacatcaatcttcttcatttctttcattcaacat 31152738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 32962455 - 32962398
Alignment:
Q  221 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 278  Q
    |||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||||||    
T  32962455 atcaattatcatattcattttaagaaaatcaaactttttcatctcctttattcaacat 32962398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 23944096 - 23944148
Alignment:
Q  230 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||||||||||||||||||||||||||||| |||| || |||||||||||||    
T  23944096 cattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtga 23944148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 34891380 - 34891437
Alignment:
Q  225 attatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||||||||| |||||||||||||||||||| |||| ||| ||| |||||||||    
T  34891380 attatcattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtga 34891437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 257
Target Start/End: Complemental strand, 22593722 - 22593597
Alignment:
Q  138 aatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatag-----tttttctt-actatcaattatc 230  Q
    |||||||||||| |||||||||| ||||||||||| ||||||||| || |   |||||| | ||||||||||      |||||||| || ||||||| ||    
T  22593722 aatcgaatcgtaattgtcattag-ggtaaattacctccaattcattaatgggtaatgtaggtctcatcgataagattttttttctttacaatcaattgtc 22593624  T
Q  231 attttcatcttaagaacatcaaacttc 257  Q
    |||||||||| ||||||||||||||||    
T  22593623 attttcatctcaagaacatcaaacttc 22593597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 265
Target Start/End: Complemental strand, 8900831 - 8900670
Alignment:
Q  107 aacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgct----ca 202  Q
    |||||||||| ||||| | |||| ||| || ||||||||  ||||||| ||||| | ||||||||||| |||||||||| | | |||||| |||    ||    
T  8900831 aacatgtgatctacatttttttttgtttcataatcgaattctacttgttattagggataaattacccc-aattcatcaatggataatgtaggcttcaaca 8900733  T
Q  203 tcgatagtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctc 265  Q
    |   |  |||||||||| || ||||| |||||| |||| ||||||| ||||||||||||||||    
T  8900732 tttttgttttttcttacaataaattaccatttttatctcaagaacaacaaacttcttcatctc 8900670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 33362436 - 33362347
Alignment:
Q  94 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 185  Q
    |||| ||||||| ||||||||||||||| ||||||| |||| ||||||||||| || ||  ||||||| |||| ||||||| || |||||||    
T  33362436 atctccttcattcaacatgtgatttacaactctttt-gttctaaaatcgaatcatatttaccattaga-gtaacttacccctaactcatcaa 33362347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 7463864 - 7463902
Alignment:
Q  226 ttatcattttcatcttaagaacatcaaacttcttcatct 264  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  7463864 ttatcattttcatttgaagaacatcaaacttcttcatct 7463902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 33362465 - 33362415
Alignment:
Q  232 ttttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||||| || |||||||||||||| || |||||||| |||||||||||||    
T  33362465 ttttcattttcagaacatcaaactttttaatctccttcattcaacatgtga 33362415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 8354444 - 8354395
Alignment:
Q  233 tttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||| |||||||| |||||||| ||| ||||| |||||||||||||    
T  8354444 tttcatctcaagaacattaaacttctacatatccttcattcaacatgtga 8354395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 27651415 - 27651379
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaa 246  Q
    |||||||||| |||||||||||||||||||| |||||    
T  27651415 tttttcttacaatcaattatcattttcatctcaagaa 27651379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 27651564 - 27651513
Alignment:
Q  230 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||||||||| |||||||||||||  | |||||||||| |||||||||||||    
T  27651564 cattttcatctcaagaacatcaaacaac-tcatctccttcattcaacatgtga 27651513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 29152402 - 29152350
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 262  Q
    |||||||||| |||| |||  |||||||||| || ||||||||||||||||||    
T  29152402 tttttcttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 99 - 282
Target Start/End: Complemental strand, 7113804 - 7113617
Alignment:
Q  99 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccc-caattcatcaaggaaaaatgtat 197  Q
    |||||||||| |||||||||||||||||||| |||||| ||| |||||||| ||| ||| || ||||||||||||| ||||||||||||||||||||||     
T  7113804 cttcatttaagatgtgatttacatctctttt-gttccataattgaatcgtatttgacatcagcggtaaattacccctcaattcatcaaggaaaaatgtag 7113706  T
Q  198 gctcatcg--atag--tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    | || |||  ||||  ||||| |||| |||||||||||||||||||| ||||| || ||||||||||||||| || ||||||| |||||    
T  7113705 gttcgtcggtatagtattttttttaccatcaattatcattttcatctcaagaatattaaacttcttcatctcattcattcaacgtgtga 7113617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 282
Target Start/End: Original strand, 40483739 - 40483922
Alignment:
Q  101 tcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-c 199  Q
    ||||| |||||||||| | |||||| || ||||||||||||||||| ||||| ||||| | ||||| |||||| ||||||||||||  | ||  || | |    
T  40483739 tcattcaacatgtgatcttcatctcatt-cgttccaaaatcgaatcatacttatcattgggggtaatttaccctcaattcatcaagagataacataggcc 40483837  T
Q  200 tcatcgatag--tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||||||||  |||||| ||| |||||||  ||  || || | ||||||||| ||||||||||||| ||||| |||||||||||    
T  40483838 tcatcgataggttttttcgtacaatcaattcccaaatttatatcaagaacatccaacttcttcatcttctttactcaacatgtga 40483922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 2243388 - 2243319
Alignment:
Q  213 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||||| || | ||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||    
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtga 2243319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 973111 - 973183
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||||| || | |||||||||| |||| || ||||| ||| ||||||||||||||||||||||||||||    
T  973111 tttttcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtga 973183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 2243335 - 2243249
Alignment:
Q  99 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 187  Q
    ||||||| |||||||||| | ||||| | ||||||| | ||||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  2243335 cttcattcaacatgtgatctccatct-tcttcgttctagaatcgaattttacttgtcattagaggtaaatta-ccccaattcatcaagg 2243249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 14138548 - 14138615
Alignment:
Q  213 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 280  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||  ||||||| || |||||||||||    
T  14138548 ttcttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgt 14138615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 17739908 - 17740009
Alignment:
Q  86 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 184  Q
    |||||||| ||||||||||||||||||||||||| ||||||  ||||||||| ||||||||| ||||| | ||||| | | |||| | | ||||||||||    
T  17739908 aacttcttcatcttcttcatttaacatgtgattttcatctc-cttcgttccagaatcgaatcctacttattattagggatgaatttcactcaattcatca 17740006  T
Q  185 agg 187  Q
    |||    
T  17740007 agg 17740009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 972845 - 972883
Alignment:
Q  226 ttatcattttcatcttaagaacatcaaacttcttcatct 264  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  972845 ttatcattttcatctcaagaacatcaaacttcttcatct 972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 7215371 - 7215322
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt 259  Q
    |||||||||| ||||| || ||||||||||| ||||||||||||||||||    
T  7215371 tttttcttacaatcaactaccattttcatctcaagaacatcaaacttctt 7215322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 7215329 - 7215230
Alignment:
Q  86 aacttcttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 185  Q
    |||||||| ||||||||||| || ||||||| | ||||| ||||| ||| ||||| ||||| || || ||||||  ||||||||||||| |||||| |||    
T  7215329 aacttcttttcttcttcattgaatatgtgatctccatct-ttttcattctaaaattgaatcatatttatcattaacggtaaattaccccgaattcaacaa 7215231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 17736829 - 17736757
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||||| | |||||| ||||||||||| || || || |||||||||||||| ||| | |||||||||||    
T  17736829 tttttcttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtga 17736757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 37077663 - 37077707
Alignment:
Q  221 atcaattatcattttcatcttaagaacatcaaacttcttcatctc 265  Q
    |||| ||||||||||||||| |||||||| |||||||||||||||    
T  37077663 atcagttatcattttcatctcaagaacattaaacttcttcatctc 37077707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 196
Target Start/End: Complemental strand, 39730484 - 39730369
Alignment:
Q  81 cttcgaacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaatt 179  Q
    ||||||||||||| |||| ||||||  || |||| || |||||||| || |||||||||||||||| |||  |||||| || |||||||||||  |||||    
T  39730484 cttcgaacttctttatctccttcatcgaagatgtaatatacatctcgtt-cgttccaaaatcgaattgtatatgtcatgaggggtaaattaccatcaatt 39730386  T
Q  180 catcaaggaaaaatgta 196  Q
    |||  | ||||||||||    
T  39730385 cattcaagaaaaatgta 39730369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 39808291 - 39808239
Alignment:
Q  226 ttatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 278  Q
    |||||||||||| ||||||| |||||||||| ||||||||||| ||| |||||    
T  39808291 ttatcattttcaccttaagaccatcaaactttttcatctccttcatttaacat 39808239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 39730361 - 39730312
Alignment:
Q  230 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 279  Q
    ||||||||||| ||||||||||||||| |||||||| || ||| ||||||    
T  39730361 cattttcatctcaagaacatcaaactttttcatctctttcatttaacatg 39730312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 22780399 - 22780347
Alignment:
Q  230 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||||||||| || ||||  |||||||||||| ||||| |||||||||||||    
T  22780399 cattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgtga 22780347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 37077760 - 37077832
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||||| |||| ||| ||||||||||| || ||||||||| ||||| || |  || |||||||||||||    
T  37077760 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtga 37077832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 92 - 278
Target Start/End: Complemental strand, 13712945 - 13712757
Alignment:
Q  92 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa-ggaaa 190  Q
    |||||| |||||||||||||||||| |||||||||||  ||||||||| | ||| ||| |||||||||| | |||||||||| |||| |||||| |||||    
T  13712945 ttatctccttcatttaacatgtgatctacatctctttg-gttccaaaacctaattgtatttgtcattagggataaattaccctcaatacatcaaaggaaa 13712847  T
Q  191 aatgtatgctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 278  Q
    | |||| |||    ||||  |||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||| |||||||||||||    
T  13712846 attgtaggcttgctgataaggtttttcttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacat 13712757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 100 - 278
Target Start/End: Complemental strand, 9050313 - 9050132
Alignment:
Q  100 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg- 198  Q
    |||||||||||| ||||||||||||  ||| ||| || ||||||||| |||| ||||||||||||||||||||| ||||||||||||  | |||||  |     
T  9050313 ttcatttaacatttgatttacatcttcttt-gtttcataatcgaatcctactagtcattagaggtaaattaccctcaattcatcaagagataatgttggt 9050215  T
Q  199 ctcatcgat---agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 278  Q
    ||| || ||   | |||||||||| |||| ||| ||||||||| | ||||||| ||||||||||||||||| | |||||||||    
T  9050214 ctcgtcaatataattttttcttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacat 9050132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 16576248 - 16576320
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||    
T  16576248 tttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 16576320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 16863459 - 16863528
Alignment:
Q  213 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||||| |||| ||| ||||||||||| |||||||||||| |||||||||| |||||||||| ||||||    
T  16863459 ttcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtga 16863528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 38576955 - 38576791
Alignment:
Q  100 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg- 198  Q
    |||||| |||||||||||| |||||| |||||| ||| |||| |||| || ||||||||||  |||||||| ||||||||||| ||||   |||||| |     
T  38576955 ttcattcaacatgtgatttccatctc-tttcgtaccataatcaaatcatatttgtcattaggagtaaatta-ccccaattcataaaggggtaatgtaggc 38576858  T
Q  199 ctcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 262  Q
    ||||||||||    |||||||||| |||| ||| ||||||||||| || |  |||||||||||||||    
T  38576857 ctcatcgataaggttttttcttacaatcagttaccattttcatctcaatataatcaaacttcttcat 38576791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 38576764 - 38576707
Alignment:
Q  132 ttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaa 189  Q
    ||||||||||||||| ||||||||||| |||||||||||||  | |||||||||||||    
T  38576764 ttccaaaatcgaatcatacttgtcatttgaggtaaattaccttcgattcatcaaggaa 38576707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 2909844 - 2909892
Alignment:
Q  232 ttttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 280  Q
    ||||||| |||| |||||||||||||||||||||||| |||||||||||    
T  2909844 ttttcattttaaaaacatcaaacttcttcatctccttcattcaacatgt 2909892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 279
Target Start/End: Original strand, 16576290 - 16576486
Alignment:
Q  86 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 184  Q
    |||||||| |||| ||||||| |||||||||| | | |||| || ||||||| ||||||||| ||||| ||||||| ||||||||| ||| |||||||||    
T  16576290 aacttcttcatctccttcattcaacatgtgatctccttctcatt-cgttccagaatcgaatcatacttatcattaggggtaaattaaccc-aattcatca 16576387  T
Q  185 aggaaaaatgtatgctcatcg-atag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 279  Q
    |||   || ||| || |  || ||||   |||||||||| |||| ||||||||||||| | || |||| ||||| ||||||| ||||| ||| ||||||    
T  16576388 aggggtaacgtaggccccacggatagagttttttcttacaatcatttatcattttcatttcaaaaacaacaaacatcttcatatccttcatttaacatg 16576486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 9931337 - 9931406
Alignment:
Q  100 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaatta 170  Q
    ||||||| ||||||||| | |||||||||| ||||||||||||||||||| |||||||  | |||||||||    
T  9931337 ttcattttacatgtgatattcatctctttt-gttccaaaatcgaatcgtatttgtcatgtggggtaaatta 9931406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 38577001 - 38576940
Alignment:
Q  221 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||| ||| ||||||||||| |||||||| ||| ||||||||||| || |||||||||||||    
T  38577001 atcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtga 38576940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 25606423 - 25606506
Alignment:
Q  100 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 184  Q
    |||||| ||||| |||| |||||||| || ||||||| || |||||| ||||||| ||||  |||||||||||| ||||||||||    
T  25606423 ttcattcaacatatgatatacatctcctt-cgttccataaacgaatcctacttgttattaagggtaaattaccctcaattcatca 25606506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 34176654 - 34176697
Alignment:
Q  221 atcaattatcattttcatcttaagaacatcaaacttcttcatct 264  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||    
T  34176654 atcagttaccattttcatcttaagaatatcaaacttcttcatct 34176697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 35370402 - 35370468
Alignment:
Q  214 tcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 280  Q
    |||||| |||| ||| |||||| |||| ||||| | ||||||||||| ||||||| |||||||||||    
T  35370402 tcttacaatcagttaccattttaatctcaagaataccaaacttcttcgtctccttcattcaacatgt 35370468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 28282699 - 28282791
Alignment:
Q  92 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 185  Q
    |||||| ||||||| || ||||||| | |||||| || ||||||| |||| |||  ||||||| ||||| |||||||||||  |||||||||||    
T  28282699 ttatctgcttcattcaatatgtgatctccatctcatt-cgttccataatcaaattttacttgttattaggggtaaattaccgtcaattcatcaa 28282791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 278
Target Start/End: Original strand, 25606366 - 25606434
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 278  Q
    ||||||||||  |||| ||||||||||| ||  ||||||||||| ||||||||||  || |||||||||    
T  25606366 tttttcttacactcaaatatcattttcaactccagaacatcaaaattcttcatctgtttcattcaacat 25606434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 28282824 - 28282876
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 262  Q
    |||||||||| ||||||||||||||||||||  | || ||||||||| |||||    
T  28282824 tttttcttacaatcaattatcattttcatctccataatatcaaactttttcat 28282876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 92 - 268
Target Start/End: Complemental strand, 25234393 - 25234217
Alignment:
Q  92 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 191  Q
    |||||| ||||||||||  ||||||||| | |||||  |||||||||||||||||||| ||||||| || ||||||||||||  ||||||||||||||||    
T  25234393 ttatctccttcatttaaggtgtgatttatacctctta-cgttccaaaatcgaatcgtatttgtcatgagcggtaaattacccgtaattcatcaaggaaaa 25234295  T
Q  192 atgtatgctcatcgata-gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctt 268  Q
    ||||| |||||| |||| | ||||||||  |||| ||| ||||||||||| |||||||||||| ||||| || |||||    
T  25234294 atgtaggctcattgatatggttttcttagcatcagttaccattttcatctcaagaacatcaaatttcttaatatcctt 25234217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 264
Target Start/End: Original strand, 25062361 - 25062544
Alignment:
Q  86 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 184  Q
    |||||||| |||| ||||||| |||||||||| | |||||| ||| |||||| |||| |||| ||||||| ||||| |||||||||||| ||||||||||    
T  25062361 aacttcttcatctgcttcattaaacatgtgatcttcatctccttt-gttccataatcaaatcctacttgttattaggggtaaattaccctcaattcatca 25062459  T
Q  185 aggaaaaatgtatgc-tcatcgat----agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatct 264  Q
    ||||| |||||| || ||| | ||      |||||||||| |||||||| | ||||||||| ||||| |||||||||||||||||    
T  25062460 aggaataatgtaggcttcaccaatttggtttttttcttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatct 25062544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 282
Target Start/End: Complemental strand, 15131698 - 15131578
Alignment:
Q  165 aaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttca 261  Q
    |||||||||  ||||||||||| |  |||||| |||||||||||    ||||||||||||||| ||| |||||| |||| |||||||||||| |||||||    
T  15131698 aaattacccttaattcatcaagaattaatgtaggctcatcgatatggttttttcttactatcagttaccatttttatctcaagaacatcaaatttcttca 15131599  T
Q  262 tctcctttattcaacatgtga 282  Q
    ||||||| ||||| |||||||    
T  15131598 tctccttcattcagcatgtga 15131578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 282
Target Start/End: Complemental strand, 54000199 - 54000050
Alignment:
Q  136 aaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcat 232  Q
    |||||||||||||| ||||||| |   ||||||||| | || ||||| ||  |||||||||   |||||||||    ||||||||||||||||||| |||    
T  54000199 aaaatcgaatcgtatttgtcatgacgagtaaattacactcagttcataaaaaaaaaatgtagattcatcgatatggttttttcttactatcaattaccat 54000100  T
Q  233 tttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||| ||||||||||||    |||||| | ||||||||||||||||    
T  54000099 tttcatctcaagaacatcaaaaaaattcatcacatttattcaacatgtga 54000050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 4115452 - 4115389
Alignment:
Q  216 ttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 279  Q
    ||||||| ||||| |||||| ||||||||||||| |||||||| |||||| || ||||||||||    
T  4115452 ttactattaattaccatttttatcttaagaacatgaaacttctccatctcattcattcaacatg 4115389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 20512891 - 20512832
Alignment:
Q  221 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 280  Q
    ||||||| ||||||||||||||  |||||||||||||||||||| ||| ||| |||||||    
T  20512891 atcaattgtcattttcatcttataaacatcaaacttcttcatcttcttcatttaacatgt 20512832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 22050851 - 22050924
Alignment:
Q  209 gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||||||||| || | |||||||||| ||||||| ||||  ||  |||||||||||||| |||||||||||||    
T  22050851 gtttttcttacaattagttatcatttttatcttaaaaacaataagtttcttcatctccttcattcaacatgtga 22050924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 55897600 - 55897693
Alignment:
Q  92 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 185  Q
    ||||||| |||||| ||||| |||| | |||||||||||||||||||||  |||  ||||||| ||||  |||||| || || |||||||||||    
T  55897600 ttatcttattcattcaacatatgatcttcatctcttttcgttccaaaattaaattctacttgttattaagggtaaactatcctcaattcatcaa 55897693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 54000275 - 54000219
Alignment:
Q  226 ttatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||||| ||||||| ||||||||||||||| |||||||| ||| || ||||||    
T  54000275 ttatcatttttatcttaaaaacatcaaacttctttatctccttcatttaagatgtga 54000219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 25062340 - 25062391
Alignment:
Q  231 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||| ||||| |||||||||||||||||||||| ||| ||| |||||||||    
T  25062340 atttttatcttcagaacatcaaacttcttcatctgcttcattaaacatgtga 25062391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 11020144 - 11020084
Alignment:
Q  221 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||| |||||||||||||||||| || ||||||| | || |||||||||||| |||||||||    
T  11020144 atcagttatcattttcatcttaaaaatatcaaacct-tttatctcctttatttaacatgtga 11020084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 22050903 - 22050995
Alignment:
Q  94 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 187  Q
    |||| ||||||| |||||||||| | |||||| || | ||| | ||||||||| || || ||||||  ||||||||||||||||||||| ||||    
T  22050903 atctccttcattcaacatgtgatcttcatctcattcctttc-agaatcgaatcatatttatcattaagggtaaattacccccaattcataaagg 22050995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 279
Target Start/End: Original strand, 39341110 - 39341268
Alignment:
Q  124 tcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttact 220  Q
    ||||| ||||| ||| ||||||| || || || | || ||||||||| || ||||| ||||||||||||| |||||||| |||||    |||||||||||    
T  39341110 tctttacgttctaaagtcgaatcatatttatcgtgaggggtaaattatcctcaattaatcaaggaaaaatatatgctcaccgatataattttttcttact 39341209  T
Q  221 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 279  Q
    || | ||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  39341210 atgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatg 39341268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 282
Target Start/End: Complemental strand, 42091951 - 42091794
Alignment:
Q  127 tttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatagtttttc-ttactatca 224  Q
    |||||||||| |||| | || ||||||| ||||| ||||||||||||||||||| ||||||   | |||||| |||| | ||  |||||| |||| || |    
T  42091951 tttcgttccataatcaagtcttacttgtgattaggggtaaattacccccaattcgtcaaggggtattgtatgtctcaccaatgctttttccttacaatta 42091852  T
Q  225 attatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||||||||||| || |||||||||||| |||||||| || ||| |||||||||    
T  42091851 attatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtga 42091794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 46303371 - 46303442
Alignment:
Q  211 ttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||||||| ||||| ||||||||| ||||  ||| |||||||||||||||||| |||||||||||||||||    
T  46303371 ttttcttacaatcaaatatcatttttatctatagagcatcaaacttcttcatcttctttattcaacatgtga 46303442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 54437848 - 54437949
Alignment:
Q  86 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 184  Q
    |||||||| |||||| |||||||||| ||| ||| ||||| ||||| ||  |||||| |||| || || ||||||||||||||||||||| |||||| ||    
T  54437848 aacttcttcatcttcctcatttaacacgtggtttccatct-ttttcattttaaaatcaaatcatatttatcattagaggtaaattacccctaattcaaca 54437946  T
Q  185 agg 187  Q
    |||    
T  54437947 agg 54437949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 31758242 - 31758298
Alignment:
Q  209 gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcc 266  Q
    ||||||||||| |||||||| |||||||||||||| || |||||||||||| ||||||    
T  31758242 gtttttcttacaatcaattaccattttcatcttaa-aatatcaaacttcttaatctcc 31758298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 39341283 - 39341340
Alignment:
Q  128 ttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 185  Q
    ||||||| ||||| ||||| || || ||||||||||||||||||||| ||||||||||    
T  39341283 ttcgttctaaaattgaatcttatttatcattagaggtaaattacccctaattcatcaa 39341340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 34762028 - 34761956
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||| | ||||||||||||||||||||  |||| ||||||| | || |||||||| | |||||||||||    
T  34762028 tttttctttcaatcaattatcattttcatctcgagaatatcaaacctttttatctccttcactcaacatgtga 34761956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 54437806 - 54437860
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatct 264  Q
    |||||||||| |||| ||| |||||| |||| || ||||||||||||||||||||    
T  54437806 tttttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatct 54437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 48646423 - 48646479
Alignment:
Q  221 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 278  Q
    |||||| | ||||||||||||||||||||||||||| ||||| | ||| |||||||||    
T  48646423 atcaatgaccattttcatcttaagaacatcaaactt-ttcatattcttcattcaacat 48646479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 20519351 - 20519299
Alignment:
Q  230 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||||||||| |||||| ||||| ||||||||||| || ||| |||||||||    
T  20519351 cattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtga 20519299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 54437651 - 54437707
Alignment:
Q  224 aattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 280  Q
    ||||| ||||||||||| || ||||| |||||||||||| ||||| ||| |||||||    
T  54437651 aattaccattttcatctcaataacattaaacttcttcatatccttcatttaacatgt 54437707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 280
Target Start/End: Original strand, 20068000 - 20068155
Alignment:
Q  128 ttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatag---tttttcttactatc 223  Q
    ||||||||| ||||||||| |||||||| |||  |||||||||||  ||||||||||| | |||||||| | |||||| ||||   |||||||||| |||    
T  20068000 ttcgttccataatcgaatcctacttgtctttaagggtaaattaccttcaattcatcaaaggaaaatgtaagcctcatccatagtgctttttcttacaatc 20068099  T
Q  224 aattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 280  Q
     | || ||||||||| |  ||||||||||||||| ||||||| || |||||||||||    
T  20068100 -agtaccattttcatgtagagaacatcaaacttcctcatctctttcattcaacatgt 20068155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 32342600 - 32342669
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 279  Q
    |||||||||| |||||||||||||||||||| || |||||||||||| |||||||| || ||||||||||    
T  32342600 tttttcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatg 32342669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 23577118 - 23577219
Alignment:
Q  179 tcatcaaggaaaaatgtatgctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaac 276  Q
    |||| ||||||||||||| |||||  ||||  |||||||||| || || ||| ||||||||||| || ||||||| |||||| ||||||||| |||||||    
T  23577118 tcatgaaggaaaaatgtaggctcaatgatatggtttttcttagtaacagttaccattttcatctcaaaaacatcatacttctccatctccttcattcaac 23577217  T
Q  277 at 278  Q
    ||    
T  23577218 at 23577219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 32047194 - 32047242
Alignment:
Q  230 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 278  Q
    ||||||||||| |||||||||||||||||||||||| || |||||||||    
T  32047194 cattttcatctcaagaacatcaaacttcttcatctcattcattcaacat 32047242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 20206527 - 20206481
Alignment:
Q  213 ttcttactatcaattatcattttcatcttaagaacatcaaacttctt 259  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||    
T  20206527 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 20206481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 22100550 - 22100504
Alignment:
Q  213 ttcttactatcaattatcattttcatcttaagaacatcaaacttctt 259  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||    
T  22100550 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 22100504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 32047262 - 32047317
Alignment:
Q  132 ttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 187  Q
    ||||| ||| ||||| ||||| ||||||||||||||||| || |||||||||||||    
T  32047262 ttccataattgaatcctacttatcattagaggtaaattatcctcaattcatcaagg 32047317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 23577068 - 23577121
Alignment:
Q  103 atttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcat 157  Q
    |||||| |||| |||||||||||||||  |||||||||||||||||| |||||||    
T  23577068 atttaagatgttatttacatctctttta-ttccaaaatcgaatcgtatttgtcat 23577121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 26236797 - 26236751
Alignment:
Q  138 aatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 184  Q
    ||||||||| ||||| | |||||||||||||||||||||||| ||||    
T  26236797 aatcgaatcatacttattattagaggtaaattacccccaatttatca 26236751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 23577009 - 23577070
Alignment:
Q  211 ttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttatt 272  Q
    |||| |||| |||||||||||||||||| |||| ||||| ||| ||||| ||||| ||||||    
T  23577009 tttttttacaatcaattatcattttcattttaaaaacataaaatttctttatctcttttatt 23577070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 46080971 - 46081041
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 280  Q
    |||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||| | |||||||||    
T  46080971 tttttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatgt 46081041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 278
Target Start/End: Original strand, 10775163 - 10775231
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 278  Q
    |||||||||  |||||||| |||||||||||||||||||||||||||||||||||| ||  ||||||||    
T  10775163 tttttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacat 10775231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 34601516 - 34601444
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||| ||| ||||||||  | ||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  34601516 tttttcctacaatcaattacaacttttatcttaagaacatcaaacttcctcatctcctttattcaacatgtga 34601444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 280
Target Start/End: Complemental strand, 7997314 - 7997194
Alignment:
Q  163 gtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt 259  Q
    |||||||||||| ||||||||||| |||||||||   |||||||||    ||||||||| ||||||||| |||||||||||  | || ||| ||||||||    
T  7997314 gtaaattaccccaaattcatcaagaaaaaatgtagattcatcgatatgattttttcttagtatcaattaccattttcatctctataatatctaacttctt 7997215  T
Q  260 catctcctttattcaacatgt 280  Q
    ||| || || |||||||||||    
T  7997214 catttctttcattcaacatgt 7997194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 44342145 - 44342055
Alignment:
Q  173 cccaattcatcaaggaaaaatgtatgctcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 262  Q
    |||||||||||||||||||||||| ||||| |||||    |||||||||||||| |||| ||||||||| | || ||||||||||||||||||    
T  44342145 cccaattcatcaaggaaaaatgtaggctcaccgatatagttttttcttactatc-attaccattttcatatcaa-aacatcaaacttcttcat 44342055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 3232179 - 3232271
Alignment:
Q  94 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 187  Q
    |||||||||||| ||||||| || | ||||||||| | ||| |  |||||||| ||||| |||||||||||||||| |||| ||||||||||||    
T  3232179 atcttcttcattcaacatgtaatctccatctctttac-ttctagtatcgaatcatacttatcattagaggtaaattgcccctaattcatcaagg 3232271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 7104316 - 7104400
Alignment:
Q  94 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaatt 179  Q
    |||| ||||||| ||||||| || | ||||||||| |||| || ||||||||| |||||||||||||| |||| ||||||||||||    
T  7104316 atctccttcattcaacatgtaatattcatctcttt-cgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 7104400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 24873765 - 24873838
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt-catctcctttattcaacatgtga 282  Q
    |||||||||| |||||||| ||||||||| ||||||| ||||||||| || ||||||| | |||||||||||||    
T  24873765 tttttcttacaatcaattaccattttcattttaagaagatcaaacttttttcatctccataattcaacatgtga 24873838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 24874598 - 24874671
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt-catctcctttattcaacatgtga 282  Q
    |||||||||| |||||||| ||||||||| ||||||| ||||||||| || ||||||| | |||||||||||||    
T  24874598 tttttcttacaatcaattaccattttcattttaagaagatcaaacttttttcatctccataattcaacatgtga 24874671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 42819621 - 42819674
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatc 263  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||| ||||||    
T  42819621 tttttcttacaatcaattatcattttcatctcaagaacataaaacttattcatc 42819674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 52432672 - 52432733
Alignment:
Q  221 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||| ||| |||| ||||    
T  52432672 atcaattaccattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtga 52432733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 12144970 - 12145039
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||||| ||||||||||||||| |||| || |   ||||||||||||||||| || |||||||||||||    
T  12144970 tttttcttacaatcaattatcatttttatctcaata---tcaaacttcttcatctcattcattcaacatgtga 12145039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 49897909 - 49897998
Alignment:
Q  83 tcgaacttcttat-cttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacc 172  Q
    ||||||||||| | || ||||||| |||||||||| | |||||| ||| |||| | ||||||||| || ||||||||||||||||||||||    
T  49897909 tcgaacttcttcttctccttcattcaacatgtgatctccatctccttt-gttctagaatcgaatcataattgtcattagaggtaaattacc 49897998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 67982 - 68054
Alignment:
Q  99 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacc 172  Q
    |||||||  ||||||||| | ||||||||| | ||||||||||| ||| || ||||||||||||||||||||||    
T  67982 cttcattctacatgtgatcttcatctcttt-cattccaaaatcggatcataattgtcattagaggtaaattacc 68054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 68097 - 68169
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||||| || | ||| |||||| || | ||||||||| ||||||||||||||||| ||| |||||||||    
T  68097 tttttcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtga 68169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 68139 - 68198
Alignment:
Q  86 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaat 145  Q
    |||||||| |||| |||||||||||||||||| | ||||| ||||||||||||||||||||    
T  68139 aacttcttcatctccttcatttaacatgtgatctccatct-ttttcgttccaaaatcgaat 68198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 49897870 - 49897942
Alignment:
Q  210 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||||| || ||||| |||||| | || |||||| || ||||||||| ||||||| |||||||||||||    
T  49897870 tttttcttacgattaattaccatttttagctcaagaacgtcgaacttcttcttctccttcattcaacatgtga 49897942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 3231979 - 3232030
Alignment:
Q  231 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||||| ||||||| ||||||||||||| || || |||||||||||||    
T  3231979 attttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtga 3232030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 38839715 - 38839664
Alignment:
Q  231 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||||| ||||||||||||| ||||||||| ||| |||| ||||||||    
T  38839715 attttcatctcaagaacatcaaacctcttcatcttcttcattcgacatgtga 38839664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 10775028 - 10775089
Alignment:
Q  221 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||| ||||||||||||||  ||||||||||| |||||| |||  || |||||||||||||    
T  10775028 atcaaatatcattttcatctccagaacatcaaatttcttcgtctgtttcattcaacatgtga 10775089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 3367806 - 3367854
Alignment:
Q  234 ttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtga 282  Q
    ||||||| |||||||||||| || |||||||| || |||||||||||||    
T  3367806 ttcatctcaagaacatcaaattttttcatctcattcattcaacatgtga 3367854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 37033 - 36976
Alignment:
Q  226 ttatcattttcatcttaaga-acatcaaacttcttcatctcctttattcaacatgtga 282  Q
    |||||||||||||||||| | |||||||| ||||||||||| ||||||||||||||||    
T  37033 ttatcattttcatcttaaaacacatcaaatttcttcatctcgtttattcaacatgtga 36976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 794 - 853
Alignment:
Q  221 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 280  Q
    |||| ||||||||||| | | ||| | ||||||||||||||||||||| |||||||||||    
T  794 atcatttatcattttcctttcaagtatatcaaacttcttcatctccttgattcaacatgt 853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 62791 - 62744
Alignment:
Q  221 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctt 268  Q
    |||| |||||| ||||||||||| ||||||||||||||| ||||||||    
T  62791 atcagttatcaatttcatcttaaaaacatcaaacttctttatctcctt 62744  T

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