View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_163 (Length: 280)
Name: NF6876A_low_163
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_163 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 36125243 - 36125516
Alignment:
| Q |
1 |
atgaagatttgaacttcgttacgaacgaaagggttgagtttgatttgcaggacttgttaagggcctcagctgaggttttgggaagtggaagttttggatc |
100 |
Q |
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| T |
36125243 |
atgaagatttgaacttcgttacgaacgaaagggttgagtttgatttgcaggacttgttaagggcctcagcagaggttttgggaagtggaagttttggatc |
36125342 |
T |
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| Q |
101 |
cacttacaaggctatggtattgacaggaccggttgttgtagtgaaaagatttaagcacatgaacaaagttggcaaaaaagagttctatgatcatatgaga |
200 |
Q |
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| T |
36125343 |
cacttacaaggctatggtattgacaggaccagttgttgtagtgaaaagatttaagcacatgaacaaagttggcaaaaaagagttctatgatcatatgaga |
36125442 |
T |
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| Q |
201 |
aggcttggaaggttgacacatcctaatctactccctctagttgcattctattatggaaaagatgagaagctttt |
274 |
Q |
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| T |
36125443 |
aggcttggaaggttgacacatcctaatctactccctctagttgcattctattatggaaaagatgagaagctttt |
36125516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 271
Target Start/End: Original strand, 42509247 - 42509377
Alignment:
| Q |
141 |
gtgaaaagatttaagcacatgaacaaagttggcaaaaaagagttctatgatcatatgagaaggcttggaaggttgacacatcctaatctactccctctag |
240 |
Q |
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| T |
42509247 |
gtgaagaggtttaagcaaatgaacaatgtagggaaggaagagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttg |
42509346 |
T |
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| Q |
241 |
ttgcattctattatggaaaagatgagaagct |
271 |
Q |
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| T |
42509347 |
ttgcttactattatagaaaagaagagaagct |
42509377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 250
Target Start/End: Original strand, 1254857 - 1255047
Alignment:
| Q |
60 |
agggcctcagctgaggttttgggaagtggaagttttggatccacttacaaggctatggtattgacaggaccggttgttgtagtgaaaagatttaagcaca |
159 |
Q |
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||||| |||||||| || | |||||||||||||||||||| ||||| ||||| || || |||| ||||| ||| || || || ||||||| ||||| |
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| T |
1254857 |
agggcttcagctgaagtgcttggaagtggaagttttggatcaacttataaggcaatagttttgaatggaccaactgtggtggttaagagatttaggcaca |
1254956 |
T |
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| Q |
160 |
tgaacaaagttggcaaaaaagagttctatgatcatatgagaaggcttggaaggttgacacatcctaatctactccctctagttgcattcta |
250 |
Q |
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| T |
1254957 |
tgaataatgttggtaaacaagagttttttgaacacatgaaaaagcttggaagtttgacacatcctaatctacttcctcttattgcattcta |
1255047 |
T |
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