View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_165 (Length: 279)
Name: NF6876A_low_165
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_165 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 4 - 270
Target Start/End: Original strand, 55374568 - 55374834
Alignment:
| Q |
4 |
gaagttaattagtgtttacaatagaaagctcctcagaaatctatatatttggacggcttttaagtaggacaagcacgtcttgtgaaattgtcatgcttgg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
55374568 |
gaagttaattagtgtttacaatagaaagctcctcagaaatctatatatttggacggcttttaagtaggacaagcacgtcttgtgaaattctcatgcttgg |
55374667 |
T |
|
| Q |
104 |
attcaatataataacttatatttaagtcaaaagctaagtaaaattagaatttagttctaaatatttaacaaatttgtcaattatgctagaagttacaatg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
55374668 |
attcaatataataacttatatttaagtcaaaagctaagtaaaattagaatttagttttaaatatttaactaatttgtcaattatgctagaagttacaatg |
55374767 |
T |
|
| Q |
204 |
gagcctagtttagattaactttaattcgtttatgaaaacttatcaacttacataagtatatattgtt |
270 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55374768 |
gagcctaatttagattaactttaattcgtttatgaaaacttatcaacttacataagtatatattgtt |
55374834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University