View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_167 (Length: 279)
Name: NF6876A_low_167
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_167 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 34573001 - 34573270
Alignment:
| Q |
1 |
tcaagttcaatttcataaagtgcaatcaatgttttacaagtcttatggagaacaactttgctatgtcggaacggtactatgataaaaatctagtggctat |
100 |
Q |
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| T |
34573001 |
tcaagttcaatttcataaagtgcaatcaatgttttacaagtctgatggagaacaactttgctatgtcggaacggtactatgataaaaatctagtggctat |
34573100 |
T |
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| Q |
101 |
ggatccattttagatgaatattttgttgagccaacagaagaaaagaaatnnnnnnntcaaaagttgaacgtcaaagacccttaagagatttagatatcat |
200 |
Q |
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| T |
34573101 |
ggatccattttagatgaatattttgttgagccaacagaagaaaagaaataaaaaaatcaaaagttgaacgtcaaagacccttaagagatttagatatcat |
34573200 |
T |
|
| Q |
201 |
atcattaatcaaaacc-----ttattaggtaaataagccacatcccttatatattcaacatttagttcat |
265 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34573201 |
atcattaatcaaaaccttattttattaggtaaataagccacatcccttatatattcaacatttagttcat |
34573270 |
T |
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