View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_168 (Length: 278)

Name: NF6876A_low_168
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_168
NF6876A_low_168
[»] chr8 (14 HSPs)
chr8 (109-243)||(15051906-15052042)
chr8 (109-244)||(15066120-15066247)
chr8 (1-108)||(1786485-1786593)
chr8 (13-108)||(3877569-3877664)
chr8 (3-108)||(13800640-13800745)
chr8 (10-105)||(30089169-30089267)
chr8 (202-244)||(15076022-15076064)
chr8 (33-108)||(533713-533788)
chr8 (151-189)||(15215211-15215249)
chr8 (114-154)||(13032961-13033001)
chr8 (35-105)||(30936663-30936734)
chr8 (233-271)||(15066058-15066096)
chr8 (233-271)||(15075960-15075998)
chr8 (109-155)||(15076154-15076200)
[»] chr5 (9 HSPs)
chr5 (1-108)||(39885812-39885919)
chr5 (3-110)||(31480458-31480565)
chr5 (26-110)||(40321495-40321579)
chr5 (26-108)||(41405992-41406074)
chr5 (26-108)||(1836015-1836097)
chr5 (15-105)||(6767928-6768018)
chr5 (33-109)||(24782708-24782784)
chr5 (61-110)||(32720174-32720223)
chr5 (56-108)||(30628731-30628783)
[»] chr3 (10 HSPs)
chr3 (1-108)||(29702389-29702496)
chr3 (3-108)||(29835757-29835862)
chr3 (26-114)||(12945475-12945563)
chr3 (2-108)||(5234703-5234809)
chr3 (2-108)||(20108043-20108149)
chr3 (3-108)||(33213415-33213520)
chr3 (11-110)||(55406367-55406465)
chr3 (1-50)||(53284239-53284288)
chr3 (36-109)||(31654615-31654689)
chr3 (33-109)||(39831200-39831276)
[»] chr4 (9 HSPs)
chr4 (1-109)||(15530059-15530167)
chr4 (26-108)||(24226870-24226952)
chr4 (13-108)||(45988116-45988211)
chr4 (3-108)||(42063003-42063108)
chr4 (3-107)||(47028101-47028205)
chr4 (36-109)||(55917400-55917473)
chr4 (33-108)||(20135440-20135515)
chr4 (36-108)||(42980257-42980330)
chr4 (41-105)||(28683092-28683155)
[»] chr2 (8 HSPs)
chr2 (13-114)||(33751500-33751601)
chr2 (13-109)||(7091098-7091194)
chr2 (14-105)||(30778295-30778386)
chr2 (2-109)||(37080703-37080810)
chr2 (33-110)||(37259669-37259746)
chr2 (33-108)||(16431880-16431955)
chr2 (33-111)||(14805571-14805649)
chr2 (33-110)||(17692623-17692700)
[»] chr7 (5 HSPs)
chr7 (3-109)||(6444140-6444246)
chr7 (14-110)||(34095841-34095937)
chr7 (2-108)||(47329642-47329748)
chr7 (33-108)||(29245281-29245356)
chr7 (33-109)||(45974452-45974528)
[»] chr1 (7 HSPs)
chr1 (15-105)||(49410512-49410602)
chr1 (3-115)||(47036243-47036355)
chr1 (3-108)||(45319607-45319712)
chr1 (36-102)||(22105398-22105464)
chr1 (33-108)||(12983549-12983624)
chr1 (33-108)||(45346264-45346339)
chr1 (63-109)||(52382617-52382663)
[»] scaffold0896 (1 HSPs)
scaffold0896 (3-108)||(1925-2030)
[»] chr6 (4 HSPs)
chr6 (3-108)||(7124334-7124439)
chr6 (10-105)||(945082-945177)
chr6 (2-99)||(4181220-4181317)
chr6 (56-108)||(12945699-12945751)
[»] scaffold0662 (1 HSPs)
scaffold0662 (3-107)||(6980-7084)
[»] scaffold0166 (1 HSPs)
scaffold0166 (33-109)||(25091-25167)
[»] scaffold0685 (1 HSPs)
scaffold0685 (63-109)||(6630-6676)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 15052042 - 15051906
Alignment:
Q  109 attatttatagcacgatgcaagtattcattcaataattttaattagtttaggattttatttaatactttatgaaatggaaccttgtgatctagtggtatt 208  Q
    ||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15052042 attatttatagcacgataccagtattcattcaataattttaactagattaggattttatttaatactttatgaaatggaaccttgtgatctaatggtatt 15051943  T
Q  209 aa--aaaatgttataccagctgggagagatatataat 243  Q
    ||  |||||||||||||||||||||||||||||||||    
T  15051942 aaaaaaaatgttataccagctgggagagatatataat 15051906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 109 - 244
Target Start/End: Complemental strand, 15066247 - 15066120
Alignment:
Q  109 attatttatagcacgatgcaagtattcattcaataattttaattagtttaggattttatttaatactttatgaaatggaaccttgtgatctagtggtatt 208  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  15066247 attatttatagcacgatgccagtactcattcaataattttaattagtttaggattttatttaa--------gaaatggaaccttgtgatctagtggtatt 15066156  T
Q  209 aaaaaatgttataccagctgggagagatatataatc 244  Q
    ||||||||||||||||||||||| ||||||||||||    
T  15066155 aaaaaatgttataccagctgggatagatatataatc 15066120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 1786593 - 1786485
Alignment:
Q  1 tcacatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatag 100  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||||||||  || || |||||||||||  |||||||||| ||||||||||||||||||    
T  1786593 tcacatactatgcaacaatcagcacacatgacacgtggcgcattattattagatgtatggtaacttcacaaaaaaagtcaattgaacaacttcaccatag 1786494  T
Q  101 -aatttccc 108  Q
     ||||||||    
T  1786493 taatttccc 1786485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 3877664 - 3877569
Alignment:
Q  13 caacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccc 108  Q
    ||||||||| || |||||| | ||||||||||||||||| || ||||||||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  3877664 caacaatcaacacacatgatacgtggcacattattattggatgtagggtaacttcaccgaaaaaatcaattgaacgacttcaccatagaatttccc 3877569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 13800745 - 13800640
Alignment:
Q  3 acatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaa 102  Q
    |||||| ||||||||||||||| | ||| |||||| | ||||||||||| || ||| |||||||||| ||||||||||| ||||  ||||||||||||||    
T  13800745 acataccatgcaacaatcagcacaaatgccatgtgacgcattattattggatgtagagtaacttcactgaaaaagtcaattgaatgacttcaccatagaa 13800646  T
Q  103 tttccc 108  Q
    ||||||    
T  13800645 tttccc 13800640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 30089169 - 30089267
Alignment:
Q  10 atgcaacaatcagcagacatgacatgtggcacattattattgaattt---agggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaattt 105  Q
    ||||||||||||||| |||||||||||||||||||||||||| || |   ||| ||||||||| ||||||||||| ||||  |||||||||||||||||    
T  30089169 atgcaacaatcagcacacatgacatgtggcacattattattggatgtaggaggataacttcactgaaaaagtcaattgaaagacttcaccatagaattt 30089267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 15076064 - 15076022
Alignment:
Q  202 tggtattaaaaaatgttataccagctgggagagatatataatc 244  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  15076064 tggtattaaaaaatgttataccagctgggatagatatataatc 15076022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 533713 - 533788
Alignment:
Q  33 atgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccc 108  Q
    ||||||| ||||||||||| || |||| ||||||| | ||||||||||| | ||  ||||||||||||||||||||    
T  533713 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttccc 533788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 15215211 - 15215249
Alignment:
Q  151 ttagtttaggattttatttaatactttatgaaatggaac 189  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  15215211 ttagattaggattttatttaatactttatgaaatggaac 15215249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 13033001 - 13032961
Alignment:
Q  114 ttatagcacgatgcaagtattcattcaataattttaattag 154  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  13033001 ttatagcacgataccagtattcattcaataattttaattag 13032961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 30936734 - 30936663
Alignment:
Q  35 gtggcacattattattgaatttagggt-aacttcaccgaaaaagtcaactgaacaacttcaccatagaattt 105  Q
    ||||||||||||||||| || |||| | || || |||||||||||||| | || ||||||||||||||||||    
T  30936734 gtggcacattattattggatgtaggattaattttaccgaaaaagtcaattaaataacttcaccatagaattt 30936663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 15066096 - 15066058
Alignment:
Q  233 agatatataatctaatcaatgacgatataatattcttcg 271  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  15066096 agatttataatctaatcaatgacgatataatatttttcg 15066058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 15075998 - 15075960
Alignment:
Q  233 agatatataatctaatcaatgacgatataatattcttcg 271  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  15075998 agatttataatctaatcaatgacgatataatatttttcg 15075960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 15076200 - 15076154
Alignment:
Q  109 attatttatagcacgatgcaagtattcattcaataattttaattagt 155  Q
    ||||||||||||| ||| | |||||||||||||||||||||| ||||    
T  15076200 attatttatagcatgataccagtattcattcaataattttaactagt 15076154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 39885812 - 39885919
Alignment:
Q  1 tcacatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39885812 tcacatactatgcaacaatcagcacacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaattgaacaacttcaccatag 39885911  T
Q  101 aatttccc 108  Q
    ||||||||    
T  39885912 aatttccc 39885919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 31480565 - 31480458
Alignment:
Q  3 acatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaa 102  Q
    |||||| ||||||||||||||| |||||||||||| | ||||||||||| || |||||||||||||||||||||||||| ||||  ||||| ||||||||    
T  31480565 acataccatgcaacaatcagcacacatgacatgtgacgcattattattggatgtagggtaacttcaccgaaaaagtcaattgaatgacttctccatagaa 31480466  T
Q  103 tttcccat 110  Q
    ||||||||    
T  31480465 tttcccat 31480458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 40321495 - 40321579
Alignment:
Q  26 acatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttcccat 110  Q
    |||||||||||||| ||||||||||| || |||| |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  40321495 acatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttcccat 40321579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 41406074 - 41405992
Alignment:
Q  26 acatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccc 108  Q
    |||||||||||||| ||||||||||| || |||| |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  41406074 acatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttccc 41405992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 1836015 - 1836097
Alignment:
Q  26 acatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccc 108  Q
    |||||||||||||| ||||||||||| || |||| |||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  1836015 acatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaaatcaattgaacaacttcaccatagaatttccc 1836097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 6768018 - 6767928
Alignment:
Q  15 acaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaattt 105  Q
    ||||| |||| |||||||||||||| ||||||||||| || ||| |||||||||||||||||||||| |||  ||||||||||||||||||    
T  6768018 acaattagcacacatgacatgtggcgcattattattggatgtagagtaacttcaccgaaaaagtcaattgaggaacttcaccatagaattt 6767928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 24782784 - 24782708
Alignment:
Q  33 atgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccca 109  Q
    ||||||| ||||||||||| || |||| ||||||| | ||||||||||| | ||  |||||||||||||||||||||    
T  24782784 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttccca 24782708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 32720174 - 32720223
Alignment:
Q  61 taacttcaccgaaaaagtcaactgaacaacttcaccatagaatttcccat 110  Q
    ||||||||||||||||||||| |||| ||||| ||| |||||||| ||||    
T  32720174 taacttcaccgaaaaagtcaattgaataactttaccgtagaattttccat 32720223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 30628731 - 30628783
Alignment:
Q  56 tagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccc 108  Q
    |||||| ||||||||||||||||||  |  ||||||||||| |||||||||||    
T  30628731 tagggttacttcaccgaaaaagtcattttgacaacttcaccgtagaatttccc 30628783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 29702496 - 29702389
Alignment:
Q  1 tcacatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatag 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29702496 tcacatactatgcaacaatcagcacacatgacatatggcacattattattgaatttagggtaacttcaccgaaaaagtcaattgaacaacttcaccatag 29702397  T
Q  101 aatttccc 108  Q
    ||||||||    
T  29702396 aatttccc 29702389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 29835757 - 29835862
Alignment:
Q  3 acatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaa 102  Q
    |||||| ||||||||||||||| ||||| |||||| | ||||||||||| || |||||||||||||| ||||||||||| ||||  ||||||||||||||    
T  29835757 acataccatgcaacaatcagcacacatgccatgtgacgcattattattggatgtagggtaacttcactgaaaaagtcaattgaatgacttcaccatagaa 29835856  T
Q  103 tttccc 108  Q
    ||||||    
T  29835857 tttccc 29835862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 12945475 - 12945563
Alignment:
Q  26 acatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttcccattatt 114  Q
    |||||||||||||| ||||||||||| || |||| |||||||| |||||||||||| |||||||||||||||||||||||||| |||||    
T  12945475 acatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttccctttatt 12945563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 5234703 - 5234809
Alignment:
Q  2 cacatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccataga 101  Q
    |||||||||||||||||| | || ||||||||  |||| |||||||||||||| |||| |||||||| | |||||||||| |||| |||||||||||| |    
T  5234703 cacatactatgcaacaataaacacacatgacacatggcgcattattattgaatgtaggataacttcatcaaaaaagtcaattgaataacttcaccataaa 5234802  T
Q  102 atttccc 108  Q
    |||||||    
T  5234803 atttccc 5234809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 20108043 - 20108149
Alignment:
Q  2 cacatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccataga 101  Q
    |||||| ||||||||||| | || ||||||||| |||| ||||||||||| || || | |||||||||| |||||||||| |||| ||||||||||||||    
T  20108043 cacatattatgcaacaataaacacacatgacatatggcgcattattattggatgtaagataacttcaccaaaaaagtcaattgaataacttcaccataga 20108142  T
Q  102 atttccc 108  Q
    |||||||    
T  20108143 atttccc 20108149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 33213520 - 33213415
Alignment:
Q  3 acatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaa 102  Q
    |||||| ||||||||||||||| ||||||||| || ||||||||||||| || || |||||||||| |||||||||||| | ||  |||| |||||||||    
T  33213520 acataccatgcaacaatcagcacacatgacatatgacacattattattggatgtatggtaacttcatcgaaaaagtcaattaaatgactttaccatagaa 33213421  T
Q  103 tttccc 108  Q
    ||||||    
T  33213420 tttccc 33213415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 55406367 - 55406465
Alignment:
Q  11 tgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttcccat 110  Q
    ||||||||||| || |||||| | ||||||||||||||||| || ||||||||||||||||||||| |||| |||||||||| ||||| |||||| ||||    
T  55406367 tgcaacaatcaacacacatgatacgtggcacattattattggatgtagggtaacttcaccgaaaaa-tcaattgaacaactttaccatcgaattttccat 55406465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 53284239 - 53284288
Alignment:
Q  1 tcacatactatgcaacaatcagcagacatgacatgtggcacattattatt 50  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  53284239 tcacatactatgcaacaatcagcacacatgacatgtggcgcattattatt 53284288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 31654689 - 31654615
Alignment:
Q  36 tggcacattattattgaatt-tagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccca 109  Q
    |||||||||||||||| ||  |||| |||||||||||||||||| || ||||  |||||||| ||||||||||||    
T  31654689 tggcacattattattggatcgtaggataacttcaccgaaaaagttaattgaatgacttcaccgtagaatttccca 31654615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 39831276 - 39831200
Alignment:
Q  33 atgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccca 109  Q
    ||||||| ||||||||||| || |||| ||||| | | ||||||||||| | ||  |||||||||||||||||||||    
T  39831276 atgtggcgcattattattggatgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaatttccca 39831200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 15530167 - 15530059
Alignment:
Q  1 tcacatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatag 100  Q
    |||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15530167 tcacatactatgcaacaatcagcacacatgacatgtgacacatttttattgaatttagggtaacttcaccgaaaaagtcaattgaacaacttcaccatag 15530068  T
Q  101 aatttccca 109  Q
    |||||||||    
T  15530067 aatttccca 15530059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 24226952 - 24226870
Alignment:
Q  26 acatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccc 108  Q
    |||||||||||||| ||||||||||| || |||| |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  24226952 acatgacatgtggcgcattattattggatgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttccc 24226870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 45988211 - 45988116
Alignment:
Q  13 caacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccc 108  Q
    ||||||||| || |||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||| ||||  ||||||||||| ||||||||    
T  45988211 caacaatcaacacacatgacatgtggcgcatcattattgaatgtaggataacttcaccgaaaaagtcaattgaatgacttcaccataaaatttccc 45988116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 42063108 - 42063003
Alignment:
Q  3 acatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaa 102  Q
    |||||| || ||||||||| || |||||||| |||||  ||||||||||||| |||| |||||||||| |||||||||| ||||  ||||||||||||||    
T  42063108 acataccattcaacaatcaacacacatgacacgtggcgtattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaa 42063009  T
Q  103 tttccc 108  Q
    ||||||    
T  42063008 tttccc 42063003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 47028205 - 47028101
Alignment:
Q  3 acatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaa 102  Q
    |||||| || ||||||||| || |||| ||| |||||  ||||||||||||| |||| |||||||||| |||||||||| ||||  ||||||||||||||    
T  47028205 acataccattcaacaatcaacacacattacacgtggcgaattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaa 47028106  T
Q  103 tttcc 107  Q
    |||||    
T  47028105 tttcc 47028101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 55917473 - 55917400
Alignment:
Q  36 tggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccca 109  Q
    |||| |||||||||||||| |||| ||||||| | ||||||||||| | ||  |||||||||||||||| ||||    
T  55917473 tggcgcattattattgaatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattcccca 55917400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 20135440 - 20135515
Alignment:
Q  33 atgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccc 108  Q
    ||||||| ||||||||||| || |||| ||||| | | ||||||||||| | ||  ||||||||||||||||||||    
T  20135440 atgtggcgcattattattggatgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaatttccc 20135515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 42980257 - 42980330
Alignment:
Q  36 tggcacattattattgaatt-tagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccc 108  Q
    |||||||||||||||| ||  |||| |||||||| ||||||||| || ||||  |||||||| |||||||||||    
T  42980257 tggcacattattattggatcgtaggataacttcatcgaaaaagttaattgaatgacttcaccgtagaatttccc 42980330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 28683092 - 28683155
Alignment:
Q  41 cattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaattt 105  Q
    ||||||||||| || |||| ||||||||||| ||||||||| | ||  |||||||||||||||||    
T  28683092 cattattattggatgtaggataacttcaccg-aaaagtcaatttaaggacttcaccatagaattt 28683155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 33751601 - 33751500
Alignment:
Q  13 caacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttcccatta 112  Q
    ||||||||| || || ||| ||||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  33751601 caacaatcaacacacgtgatatgtggcacattattattggatgtagggtaacttcaccgaaaaagtcaattgaacgacttcaccatagaatttcccatta 33751502  T
Q  113 tt 114  Q
    ||    
T  33751501 tt 33751500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 7091098 - 7091194
Alignment:
Q  13 caacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccca 109  Q
    ||||||||| || || ||| | ||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  7091098 caacaatcaacacacgtgatacgtggcacattattattggatgtagggtaacttcaccgaaaaagtcaattgaacgacttcaccatagaatttccca 7091194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 30778386 - 30778295
Alignment:
Q  14 aacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaattt 105  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| | || ||||||||| ||||||||    
T  30778386 aacaatcagcacacatgacatgtggcacattattattgaatgtagagtaacttcatcgaaaaagtcaattaaagaacttcaccgtagaattt 30778295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 37080703 - 37080810
Alignment:
Q  2 cacatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccataga 101  Q
    |||||||||||||||||| | || ||||||||  |||| ||||||||||| || |||| |||||||| | |||||||||| |||| ||||||||||||||    
T  37080703 cacatactatgcaacaataaacacacatgacacatggcgcattattattggatgtaggataacttcatcaaaaaagtcaattgaataacttcaccataga 37080802  T
Q  102 atttccca 109  Q
    ||||||||    
T  37080803 atttccca 37080810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 37259746 - 37259669
Alignment:
Q  33 atgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttcccat 110  Q
    ||||||| ||||||||||| || |||| ||||||| | ||||||||||| | ||  ||||||||||||||||||||||    
T  37259746 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccat 37259669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 16431880 - 16431955
Alignment:
Q  33 atgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccc 108  Q
    ||||||| ||||||||||| || |||| ||||||| | ||||||||||| | ||  ||||||||||||||||||||    
T  16431880 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttccc 16431955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 14805649 - 14805571
Alignment:
Q  33 atgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttcccatt 111  Q
    ||||||| ||||||||||| || |||| ||||||| | |||||| |||| | ||  |||||||||||||||||||||||    
T  14805649 atgtggcgcattattattggatgtaggataacttctctgaaaaattcaatttaatgacttcaccatagaatttcccatt 14805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 17692623 - 17692700
Alignment:
Q  33 atgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttcccat 110  Q
    ||||||| ||||||||||| || |||| ||||||| | ||||||||||| | ||  ||||||||||||||||| ||||    
T  17692623 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattttccat 17692700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 6444140 - 6444246
Alignment:
Q  3 acatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaa 102  Q
    |||||| || ||||||||| || |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||| ||||  ||||||||||||||    
T  6444140 acataccattcaacaatcaacacacatgacatgtggcgcattattattgaatgtaggataacttcaccgaaaaagtcaattgaatgacttcaccatagaa 6444239  T
Q  103 tttccca 109  Q
    |||||||    
T  6444240 tttccca 6444246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 34095841 - 34095937
Alignment:
Q  14 aacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttcccat 110  Q
    |||||||| || |||||||| ||||| |||||||||||||| |||| |||||||||| |||||||||| ||||  ||||||||||||||||||||||    
T  34095841 aacaatcaacacacatgacacgtggcgcattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttcccat 34095937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 47329642 - 47329748
Alignment:
Q  2 cacatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccataga 101  Q
    |||||||||||||||||| | || ||||||||  |||| ||||||||||| || |||| |||||||| | |||||||||| |||| |||||||||||| |    
T  47329642 cacatactatgcaacaataaacacacatgacacatggcgcattattattggatgtaggataacttcatcaaaaaagtcaattgaataacttcaccataaa 47329741  T
Q  102 atttccc 108  Q
    |||||||    
T  47329742 atttccc 47329748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 29245281 - 29245356
Alignment:
Q  33 atgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccc 108  Q
    ||||||| ||||||||||| || |||| ||||||| | ||||||||||| | || |||||||||||||||||||||    
T  29245281 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaataacttcaccatagaatttccc 29245356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 45974452 - 45974528
Alignment:
Q  33 atgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccca 109  Q
    ||||||| ||||||||||| || |||| ||||||| | ||||||||||| | ||  |||||||||||||||||||||    
T  45974452 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttccca 45974528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 49410512 - 49410602
Alignment:
Q  15 acaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaattt 105  Q
    |||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||||  |||| ||||||||||||||||||    
T  49410512 acaatcagcacacatgacatgtggcgcattattattggatgtagggtaacttcaccgaaaaagtcatttgaagaacttcaccatagaattt 49410602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 47036243 - 47036355
Alignment:
Q  3 acatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaa 102  Q
    |||||| ||||||||||||| | |||||||||||| | ||||||||||| || || ||||||||||  ||| ||||||| ||||  ||||||||||||||    
T  47036243 acataccatgcaacaatcagaacacatgacatgtgacgcattattattggatgtatggtaacttcattgaagaagtcaattgaatgacttcaccatagaa 47036342  T
Q  103 tttcccattattt 115  Q
    |||||| ||||||    
T  47036343 tttccctttattt 47036355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 45319712 - 45319607
Alignment:
Q  3 acatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaa 102  Q
    |||||| || ||||||||| || | |||||| ||||| |||||||||||||| || | |||||||||| |||||||||| ||||  ||||||||||||||    
T  45319712 acatacaattcaacaatcaacacaaatgacacgtggcgcattattattgaatgtaagataacttcaccaaaaaagtcaattgaatgacttcaccatagaa 45319613  T
Q  103 tttccc 108  Q
    ||||||    
T  45319612 tttccc 45319607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 22105464 - 22105398
Alignment:
Q  36 tggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaa 102  Q
    |||| ||||||||||| || |||| ||||||||||||||||||||| |||| ||||||| |||||||    
T  22105464 tggcgcattattattggatgtaggataacttcaccgaaaaagtcaattgaagaacttcatcatagaa 22105398  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 12983549 - 12983624
Alignment:
Q  33 atgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccc 108  Q
    ||||||| |||||||||||||| |||| ||||||| | ||||||||||| | |   ||||||||||||||||||||    
T  12983549 atgtggcgcattattattgaatgtaggataacttctctgaaaaagtcaatttattgacttcaccatagaatttccc 12983624  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 45346339 - 45346264
Alignment:
Q  33 atgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccc 108  Q
    ||||||| ||||||||||| || |||| ||||||| | ||||||||||| | ||  |||||||| |||||||||||    
T  45346339 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccgtagaatttccc 45346264  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 52382663 - 52382617
Alignment:
Q  63 acttcaccgaaaaagtcaactgaacaacttcaccatagaatttccca 109  Q
    ||||||||||| ||||||  | |||||||||||||||||||||||||    
T  52382663 acttcaccgaagaagtcattttaacaacttcaccatagaatttccca 52382617  T

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Target: scaffold0896 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 1925 - 2030
Alignment:
Q  3 acatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaa 102  Q
    |||||| || ||||||||| || |||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||| ||||  |||||||| |||||    
T  1925 acataccattcaacaatcaacacacatgacatgtggcgcattattattgaatgtaggataacttcactgaaaaagtcaattgaatgacttcaccgtagaa 2024  T
Q  103 tttccc 108  Q
    ||||||    
T  2025 tttccc 2030  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 7124439 - 7124334
Alignment:
Q  3 acatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaa 102  Q
    |||||| || ||||||||| || |||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||| ||||  |||||||| |||||    
T  7124439 acataccattcaacaatcaacacacatgacatgtggcgcattattattgaatgtaggataacttcactgaaaaagtcaattgaatgacttcaccgtagaa 7124340  T
Q  103 tttccc 108  Q
    ||||||    
T  7124339 tttccc 7124334  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 945082 - 945177
Alignment:
Q  10 atgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaattt 105  Q
    ||||||||||||||| |||||||||||| | |||||||||||||| ||| ||||||||| | |||||||||| |||  ||||||||||||||||||    
T  945082 atgcaacaatcagcacacatgacatgtgacgcattattattgaatgtagagtaacttcatcaaaaaagtcaattgaggaacttcaccatagaattt 945177  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 4181220 - 4181317
Alignment:
Q  2 cacatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccata 99  Q
    |||||||||||||||||| | || ||||||||  || | ||||||||||| || |||| ||||||||   |||||||||| |||| ||||||||||||    
T  4181220 cacatactatgcaacaataaacacacatgacacatgacgcattattattggatgtaggataacttcataaaaaaagtcaattgaataacttcaccata 4181317  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 12945699 - 12945751
Alignment:
Q  56 tagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccc 108  Q
    |||||| ||||||||||||||||||  |   ||||||||||||||||||||||    
T  12945699 tagggttacttcaccgaaaaagtcattttggcaacttcaccatagaatttccc 12945751  T

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Target: scaffold0662 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 7084 - 6980
Alignment:
Q  3 acatactatgcaacaatcagcagacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaa 102  Q
    |||||| || ||||||||| || |||| ||| |||||  ||||||||||||| |||| |||||||||| |||||||||| ||||  ||||||||||||||    
T  7084 acataccattcaacaatcaacacacattacacgtggcgaattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaa 6985  T
Q  103 tttcc 107  Q
    |||||    
T  6984 tttcc 6980  T

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Target: scaffold0166 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 25167 - 25091
Alignment:
Q  33 atgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaactgaacaacttcaccatagaatttccca 109  Q
    ||||||| ||||||||||| || |||| ||||||| | ||||||||||| | ||  |||||||||||||||||||||    
T  25167 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttccca 25091  T

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Target: scaffold0685 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 6676 - 6630
Alignment:
Q  63 acttcaccgaaaaagtcaactgaacaacttcaccatagaatttccca 109  Q
    ||||||||||| ||||||  | |||||||||||||||||||||||||    
T  6676 acttcaccgaagaagtcattttaacaacttcaccatagaatttccca 6630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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