View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_173 (Length: 271)
Name: NF6876A_low_173
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_173 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 3164788 - 3165050
Alignment:
| Q |
1 |
tcaagctttgattgcgaaactttagcctgctcagtagattgcaaaacttcaagcttagtctcgttattatcggcagatgccgctgaaacctgggattcag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3164788 |
tcaagctttgattgcgaaactttagcctgctcagtaggttgcaaaacttcaagcttagtctcgttattatcggcagatgccgctgaaacctgggattcag |
3164887 |
T |
|
| Q |
101 |
gagaccagtttgttctcgtttcgtgagtgaaacttccggcggataggccatcctttgatgtttccttggtggaagatttaactctctccaaattctgcaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3164888 |
gagaccagtttgttctcgtttcgtgagtgaaacttccggcagataggccatcctttgatgtttccttggtggaagatttaactctctccaatttctgcaa |
3164987 |
T |
|
| Q |
201 |
aggtaaatgtgatgctggactttctaagccattttcacaatcatctttttcctcgttcttctc |
263 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3164988 |
aggtaaatgtgatgctggactttctaagccattttcacaatcatctttttcctcgttcttctc |
3165050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 3164512 - 3164774
Alignment:
| Q |
1 |
tcaagctttgattgcgaaactttagcctgctcagtagattgcaaaacttcaagcttagtctcgttattatcggcagatgccgctgaaacctgggattcag |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||| |||| |||||||||||||| |
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| T |
3164512 |
tcaagctttgattgcggaactttagcctgctcagtagattgcaaaacttcaggcttagtctcattatcatcggcagatgctgctggaacctgggattcag |
3164611 |
T |
|
| Q |
101 |
gagaccagtttgttctcgtttcgtgagtgaaacttccggcggataggccatcctttgatgtttccttggtggaagatttaactctctccaaattctgcaa |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||| | || |||||||||||||||||||| || ||||||||||||||||||||||| ||||| | |
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| T |
3164612 |
gagaccagtttgtcctcgtttcgtgagtgaaacttccagtagacaggccatcctttgatgtttctttagtggaagatttaactctctccaatttctggga |
3164711 |
T |
|
| Q |
201 |
aggtaaatgtgatgctggactttctaagccattttcacaatcatctttttcctcgttcttctc |
263 |
Q |
| |
|
||||| ||||||| | |||||||||| ||||||||||||||||| ||||| |||||||||||| |
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| T |
3164712 |
aggtacatgtgatacaggactttctatgccattttcacaatcatgttttttctcgttcttctc |
3164774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 3163960 - 3164222
Alignment:
| Q |
1 |
tcaagctttgattgcgaaactttagcctgctcagtagattgcaaaacttcaagcttagtctcgttattatcggcagatgccgctgaaacctgggattcag |
100 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||| ||||| || |||| |||||||| ||||| |
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| T |
3163960 |
tcaagctttgatcccgaaactttatcctgctcagtagattgcaaaacttcaggcttagtcttgttatcatcagcagacgcagctggaacctgggtttcag |
3164059 |
T |
|
| Q |
101 |
gagaccagtttgttctcgtttcgtgagtgaaacttccggcggataggccatcctttgatgtttccttggtggaagatttaactctctccaaattctgcaa |
200 |
Q |
| |
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| ||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| || |||||| |||||| |||||||| ||||| | |
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| T |
3164060 |
gggaccaatttgtcctcgtttcgtgtgtgaaacttccggaagataggccatcctttgatgtttctttaatggaagttttaacgctctccaatttctggga |
3164159 |
T |
|
| Q |
201 |
aggtaaatgtgatgctggactttctaagccattttcacaatcatctttttcctcgttcttctc |
263 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
3164160 |
tggtaaatgtgatactggactttctaagccattttcacaatcatcttttttctcattcttctc |
3164222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 3164236 - 3164498
Alignment:
| Q |
1 |
tcaagctttgattgcgaaactttagcctgctcagtagattgcaaaacttcaagcttagtctcgttattatcggcagatgccgctgaaacctgggattcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| || ||| |||||| |
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| T |
3164236 |
tcaagctttgattgcgaaactttagcctgctcagtagattgcaaaacttcaggcttagtctcgctatcatcggcagatgccgctggaatctgtgattcat |
3164335 |
T |
|
| Q |
101 |
gagaccagtttgttctcgtttcgtgagtgaaacttccggcggataggccatcctttgatgtttccttggtggaagatttaactctctccaaattctgcaa |
200 |
Q |
| |
|
||||||| ||||| ||||||| | |||||||||||| ||| |||||||||||||||||||| || || ||| ||||||||||||||||||| ||||| | |
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| T |
3164336 |
gagaccattttgtcctcgttttgcgagtgaaacttctggcagataggccatcctttgatgtctctttagtgcaagatttaactctctccaatttctggga |
3164435 |
T |
|
| Q |
201 |
aggtaaatgtgatgctggactttctaagccattttcacaatcatctttttcctcgttcttctc |
263 |
Q |
| |
|
|||| ||||||| | |||||||||| || ||||||||||||| ||||| |||||||||||| |
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| T |
3164436 |
aggtgcatgtgatacgagactttctaatccgttttcacaatcatgttttttctcgttcttctc |
3164498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 56 - 263
Target Start/End: Original strand, 22844092 - 22844296
Alignment:
| Q |
56 |
tagtctcgttattatcggcagatgccgctgaaacctgggattcaggagaccagtttgttctcgtttcgtgagtgaaacttccggcggataggccatcctt |
155 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||| |||||||| | |||||||||||||| ||||||||||| |||||||||||||| |
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| T |
22844092 |
tagtctcgttattatcggcagatggcg-----acctgggattcaggacaccagtttatcctcgtttcgtgagtaaaacttccggcagataggccatcctt |
22844186 |
T |
|
| Q |
156 |
tgatgtttccttggt--ggaagatttaactctctccaaattctgcaaaggtaaatgtgatgctggactttctaagccattttcacaatcatctttttcct |
253 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| || ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
22844187 |
tgatgtttccttggtggggaaggtttaactctctccaatttttgcgaaggtaaatgtgatgttggactttttaagccattttcacaatcatctttttcct |
22844286 |
T |
|
| Q |
254 |
cgttcttctc |
263 |
Q |
| |
|
| |||||||| |
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| T |
22844287 |
cattcttctc |
22844296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 3163700 - 3163946
Alignment:
| Q |
17 |
aaactttagcctgctcagtagattgcaaaacttcaagcttagtctcgttattatcggcagatgccgctgaaacctgggattcaggagaccagtttgttct |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||| || |||| ||||| |||||| |||| ||||||||||||||||||||||||||| || |
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| T |
3163700 |
aaactttagcctgctcagtagattgtgaaacttcaggcttagtttcattatcatcggaagatgcagctggaacctgggattcaggagaccagtttgtcct |
3163799 |
T |
|
| Q |
117 |
cgtttcgtgagtgaaacttccggcggataggccatcctttgatgtttccttggtggaagatttaactctctccaaattctgcaaaggtaaatgtgatgct |
216 |
Q |
| |
|
||||| || |||||||| ||| | |||| || ||||||||||| || || | |||||||| ||||||| ||| ||||| | |||||||||||| || |
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|
| T |
3163800 |
tgtttcttgtgtgaaactcccgacagataatccttcctttgatgtctctttagcggaagattcaactctcatcaatttctgagatggtaaatgtgatact |
3163899 |
T |
|
| Q |
217 |
ggactttctaagccattttcacaatcatctttttcctcgttcttctc |
263 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || |||||||| |
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|
| T |
3163900 |
ggactttctaagccattttgacaatcatcttttttttccttcttctc |
3163946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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