View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_176 (Length: 269)
Name: NF6876A_low_176
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_176 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 37101626 - 37101889
Alignment:
| Q |
1 |
tcaggttacagggaaacaaactaatatccactcaaacaatttagcagtgttagtgatatgcaagtggaagataaaagcgccatggacattaaa-taaatg |
99 |
Q |
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| T |
37101626 |
tcaggttacagggaaacaaactaatatccactcaaacaatttagcagtgttagtgatatgcaagtggaagataaaagcgccatggacattaaaataaatg |
37101725 |
T |
|
| Q |
100 |
tcatagacattcaagcacattatctcccgttgttcatttaatatcttgagttgtgtgagatgaaagtgtacaaagggggtgttgtactaaaagttctggg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37101726 |
tcatagacattcaagcacattatctcccgttgttcatttaatatcttgagctgtgtgagatgaaagtgtacaaggggggtgttgtactaaaagttctggg |
37101825 |
T |
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| Q |
200 |
catgaatatgagaaaaataaacaaggatttttctggcaaaaggcaataactgttgaacaccaaa |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37101826 |
catgaatatgagaaaaataaacaaggatttttctggcaaaaggcaataactgttgaacaccaaa |
37101889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 6921292 - 6921555
Alignment:
| Q |
1 |
tcaggttacagggaaacaaactaatatccactcaaacaatttagcagtgttagtgatatgcaagtggaagataaaagcgccatggacattaaa-taaatg |
99 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||||||| | ||||| ||||||| |||||| |
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| T |
6921292 |
tcaggttacatgaaaacaaactaatatccactcaaacaatttagcagtcttggtgatatgtatgtggaagataaaaacatcatgggcattaaagtaaatg |
6921391 |
T |
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| Q |
100 |
tcatagacattcaagcacattatctcccgttgttcatttaatatcttgagttgtgtgagatgaaagtgtacaaagggggtgttgtactaaaagttctggg |
199 |
Q |
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| T |
6921392 |
tcatagacattcaagcacattatctcctcttgttcatttgatatcttgagctgggtgagatgaaagtgtacaaggggggtgttgtactaaaagttctggg |
6921491 |
T |
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| Q |
200 |
catgaatatgagaaaaataaacaaggatttttctggcaaaaggcaataactgttgaacaccaaa |
263 |
Q |
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| || |||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||| |
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| T |
6921492 |
taataagatgagaaaaataaacaaggattttgctggcaaaaagcagtaattgttgaacaccaaa |
6921555 |
T |
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