View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_177 (Length: 268)
Name: NF6876A_low_177
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_177 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 4301491 - 4301722
Alignment:
| Q |
19 |
catcatatgggcttgagacaacgaagggttccatcatagcaaaacgggtgtgtctcatggttaaattagtttggagaccattcattgcatcatcagttga |
118 |
Q |
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| T |
4301491 |
catcatatgggcttgagacaacgaagggctccatcatagcaaaacgggtgtgtttcatggttaaattagtttggagaccattcattgcatcatcagttga |
4301590 |
T |
|
| Q |
119 |
gaaatcaatcaaagccaccaatggttatgtttcacgaaaggaacataagtcaaattccaagaaagatgattctgaagacattgatgaagccaattctgaa |
218 |
Q |
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| T |
4301591 |
gaaatcaatcaaagccaccaatggttatgtttcacgaaaggaacataagtcaaattccaagaaagatgattctgaagacattgatgaagccaattctgaa |
4301690 |
T |
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| Q |
219 |
gtgtatgtcttgagttttgctagatacaagaa |
250 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4301691 |
gtgtatgtcttgagttttgctagatacaagaa |
4301722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 96 - 219
Target Start/End: Complemental strand, 33959167 - 33959044
Alignment:
| Q |
96 |
ccattcattgcatcatcagttgagaaatcaatcaaagccaccaatggttatgtttcacgaaaggaacataagtcaaattccaagaaagatgattctgaag |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||| |
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| T |
33959167 |
ccattcattgcatcatcagttgagaaatcaatcaaagcaaacaatggttatgtttcacgaaaggagcataagtcaaatacaaagcaagatgattctgaag |
33959068 |
T |
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| Q |
196 |
acattgatgaagccaattctgaag |
219 |
Q |
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| T |
33959067 |
acatagatgaagccaagtctgaag |
33959044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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