View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_183 (Length: 266)
Name: NF6876A_low_183
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_183 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 261
Target Start/End: Complemental strand, 15091108 - 15090851
Alignment:
| Q |
4 |
cgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataaca |
103 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15091108 |
cgaaggtcacatggttcactatctcgacccgtttttggttacaaggttgtcacacagaatgaaggtagaaatggcgattgggttatggttcgtaataaca |
15091009 |
T |
|
| Q |
104 |
aagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15091008 |
aagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccacaggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactgc |
15090909 |
T |
|
| Q |
204 |
caacacttcaaattggcgtgacaagaatgtgcggagtctgtcttcacaggagattgct |
261 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15090908 |
caacactggaaattggcgtgacaagaatgtgaggagtctgtcttcacaggagattgct |
15090851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 43010593 - 43010829
Alignment:
| Q |
19 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43010593 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
43010692 |
T |
|
| Q |
119 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacacttcaaattg |
218 |
Q |
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|||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43010693 |
gttttcctggaggaaacagtggaggaaa---ca---atcgtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacactgcaaattg |
43010786 |
T |
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| Q |
219 |
gcgtgacaagaatgtgcggagtctgtcttcacaggagattgct |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43010787 |
gcgtgacaagaatgtgcggagtctgtcttcacaagagattgct |
43010829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 43012890 - 43013126
Alignment:
| Q |
19 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43012890 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
43012989 |
T |
|
| Q |
119 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacacttcaaattg |
218 |
Q |
| |
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|||||||||||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43012990 |
gttttcctggaggaaacagtggaggaaa---ca---atcgtgcacgtgaaatgtttaatgttggacaaaacaaaacacacactatcaacactgcaaattg |
43013083 |
T |
|
| Q |
219 |
gcgtgacaagaatgtgcggagtctgtcttcacaggagattgct |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43013084 |
gcgtgacaagaatgtgcggagtctgtcttcacaagagattgct |
43013126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 261
Target Start/End: Complemental strand, 25203924 - 25203668
Alignment:
| Q |
5 |
gaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaa |
104 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25203924 |
gaaggtcacatggttcactatctcgacctgtttttggtaacaaggttgttacacaaaatgaaggtagaaagggcgattgggttatggttcgtaataacaa |
25203825 |
T |
|
| Q |
105 |
agacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatc |
204 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||||||||||||| | |
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| T |
25203824 |
agacaatcgtgatcattttcctggaggaaacagtggaggaagatccataggtggtttgcgtggaatgtttaatgttagacaaaacaaaacacacactacc |
25203725 |
T |
|
| Q |
205 |
aacacttcaaattggcgtgacaagaatgtgcggagtctgtcttcacaggagattgct |
261 |
Q |
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|||| | |||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
25203724 |
aacattggaaattggcgtgacaagaatgtgaggaatctgtcttcacaggagattgct |
25203668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 234
Target Start/End: Original strand, 35074805 - 35075035
Alignment:
| Q |
4 |
cgaagatcacatggttcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataaca |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| |
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| T |
35074805 |
cgaaggtcacatggttcactatctcgacccatttttggtaacaaggttgtcacacagaatgaaggtagaaatggcgatcgggttatggttcataataaca |
35074904 |
T |
|
| Q |
104 |
aagacaatcgtgatcgttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactat |
203 |
Q |
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||||||||| ||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35074905 |
aagacaatcatgatcgttttcttggaggaaacagttgaggaaaattcacaggtggtgcacgtggaatgtttaatgttcgacaaaacaaaacacacactgc |
35075004 |
T |
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| Q |
204 |
caacacttcaaattggcgtgacaagaatgtg |
234 |
Q |
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||||||| |||||||||||||||||||||| |
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| T |
35075005 |
caacactggaaattggcgtgacaagaatgtg |
35075035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 25676775 - 25676539
Alignment:
| Q |
19 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatggttcgtaataacaaagacaatcgtgatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25676775 |
tcactatctcgacccgtttttggtaacaaagttgtcacacagaatgaaggtagaaatagcgattgggttatgattcgtaataacaaagacaatcgtgatc |
25676676 |
T |
|
| Q |
119 |
gttttcctggaggaaacagtggaggaaaatccactggtggtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacacttcaaattg |
218 |
Q |
| |
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|||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25676675 |
gttttcctggaggaaacagtggaggaaa---ca---atcgtgcacgtggaatgtttaatgttggacaaaacaaaacacacactatcaacactgcaaattg |
25676582 |
T |
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| Q |
219 |
gcgtgacaagaatgtgcggagtctgtcttcacaggagattgct |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
25676581 |
gcgtgacaagaatgtgcggagtctgtcttcacaagagattgct |
25676539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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