View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_188 (Length: 263)
Name: NF6876A_low_188
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_188 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 25 - 263
Target Start/End: Original strand, 33810741 - 33810979
Alignment:
| Q |
25 |
tagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810741 |
tagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccc |
33810840 |
T |
|
| Q |
125 |
ttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagcc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810841 |
ttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagcc |
33810940 |
T |
|
| Q |
225 |
atccctttactctatacctccaaccacttcaaatcacat |
263 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33810941 |
atccctttaccctatacctccaaccacttcaaatcacat |
33810979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 25 - 263
Target Start/End: Original strand, 33870210 - 33870448
Alignment:
| Q |
25 |
tagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33870210 |
tagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccc |
33870309 |
T |
|
| Q |
125 |
ttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagcc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33870310 |
ttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagagcctgtgggtcagcagggacaacgctaccatctcgagcc |
33870409 |
T |
|
| Q |
225 |
atccctttactctatacctccaaccacttcaaatcacat |
263 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33870410 |
atccctttaccctatacctccaaccacttcaaatcacat |
33870448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 33830917 - 33831068
Alignment:
| Q |
26 |
agaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccct |
125 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||| | | ||||| |
|
|
| T |
33830917 |
agaggggtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct |
33831016 |
T |
|
| Q |
126 |
tggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttct |
177 |
Q |
| |
|
||||| ||| ||||||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
33831017 |
tggcctgtagcatcaaactgaatccaacttgtagaagactgtgtcttcttct |
33831068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 33893080 - 33893231
Alignment:
| Q |
26 |
agaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccct |
125 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||| | | ||||| |
|
|
| T |
33893080 |
agaggggtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct |
33893179 |
T |
|
| Q |
126 |
tggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttct |
177 |
Q |
| |
|
||||| ||| ||||||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
33893180 |
tggcctgtagcatcaaactgaatccaacttgtagaagactgtgtcttcttct |
33893231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 24408960 - 24408805
Alignment:
| Q |
28 |
aggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagacccttg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
24408960 |
aggggtaagagagcaagggatcaaggattctaagatcatgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaatttgagaccagtg |
24408861 |
T |
|
| Q |
128 |
gccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaa |
183 |
Q |
| |
|
|||| ||| ||| |||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
24408860 |
gccattactatccaaagcaatccagcttccaaaagactgtgtcttcttcttcacaa |
24408805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 24410123 - 24410211
Alignment:
| Q |
26 |
agaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24410123 |
agaggggtaagagagcaagggatcaaggattctaagatcacatgcattaatctgaaccctatgcatgatagcatacttgtccacatcaa |
24410211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 24410634 - 24410676
Alignment:
| Q |
141 |
aaagcaatccagcttctagaagactgtgtcttcttcttcacaa |
183 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
24410634 |
aaagcaatccagcttccaaaagactgtgtcttcttcttcacaa |
24410676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 235
Target Start/End: Complemental strand, 24408808 - 24408777
Alignment:
| Q |
204 |
acaacgctaccatctcgagccatccctttact |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24408808 |
acaacgctaccatctcgagccatccctttact |
24408777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University