View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_189 (Length: 263)
Name: NF6876A_low_189
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_189 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 19689515 - 19689364
Alignment:
| Q |
7 |
tttggtgtttaaccttaacattcttcttttaatatttctactatattactttacgattaatcttcatttgaaataaagagttctagtcttattttattat |
106 |
Q |
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| T |
19689515 |
tttggtgtttaaccttaaccttcttcttttaatatttctactatattactttacgattaatcttcatttgaaataaagagttctagtcttattttattat |
19689416 |
T |
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| Q |
107 |
tttcttttgaaatcgcttgctaatgtatggnnnnnnnacgattcagaaactg |
158 |
Q |
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| T |
19689415 |
tttcttttgaaatcgcttgctaatgtatggtttttttacgattcagaaactg |
19689364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 19689298 - 19689261
Alignment:
| Q |
224 |
ccaattcagtcgattccaattcttgttattttcattgt |
261 |
Q |
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| T |
19689298 |
ccaattcagtcgattccaattcttgttattttcattgt |
19689261 |
T |
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