View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_191 (Length: 260)

Name: NF6876A_low_191
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_191
NF6876A_low_191
[»] chr5 (4 HSPs)
chr5 (1-256)||(37704678-37704933)
chr5 (5-141)||(37699207-37699349)
chr5 (5-81)||(37437747-37437823)
chr5 (200-236)||(1630012-1630048)
[»] chr4 (2 HSPs)
chr4 (5-141)||(16840857-16841003)
chr4 (201-241)||(31095092-31095132)
[»] chr6 (2 HSPs)
chr6 (201-243)||(17411089-17411131)
chr6 (200-229)||(196258-196287)
[»] chr8 (1 HSPs)
chr8 (201-246)||(18080600-18080645)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 37704678 - 37704933
Alignment:
Q  1 tgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704678 tgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaat 37704777  T
Q  101 cggagacttagacttcttcaaatgtacatactttaaagagcaaattacgatacttttaagttatttaattataacaaatcggnnnnnnnnnnnnnnnncg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||                ||    
T  37704778 cggagacttagacttcttcaaatgtacatactttaaagagcaaattacgagacttttaagttatttaattataacaaatcggttttttaagattttttcg 37704877  T
Q  201 tatcacttacgtcatttaagttatttaatgataacaagttagttatgtagttgctc 256  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  37704878 tatcacttgcgtcatttaagttatttaattataacaagttagttatgtagttgctc 37704933  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 37699207 - 37699349
Alignment:
Q  5 ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaat------aacattaattgtatttaga 98  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||      ||||||||||||||||||     
T  37699207 ataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctaaaatgaagaaaataataacaacattaattgtatttagc 37699306  T
Q  99 atcggagacttagacttcttcaaatgtacatactttaaagagc 141  Q
    | ||||||||||||||||||||| || ||| ||||||||||||    
T  37699307 aacggagacttagacttcttcaactgaacagactttaaagagc 37699349  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 37437747 - 37437823
Alignment:
Q  5 ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataa 81  Q
    |||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  37437747 ataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctgaaatgaagaaaataa 37437823  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 1630048 - 1630012
Alignment:
Q  200 gtatcacttacgtcatttaagttatttaatgataaca 236  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  1630048 gtatcacttacgtcttttaagttatttaatcataaca 1630012  T

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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 16841003 - 16840857
Alignment:
Q  5 ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaa----atacacctgaaatgaagaaaat------aacattaattgtatt 94  Q
    ||||||||||||||||||||||||| |||||||| ||| |||| |||||||||    ||||||||||||||||||||||      |||||||| ||||||    
T  16841003 ataagataacaaattcatttaagtaccaatcacaatgaataatttgcttaaaaatatatacacctgaaatgaagaaaataataacaacattaaatgtatt 16840904  T
Q  95 tagaatcggagacttagacttcttcaaatgtacatactttaaagagc 141  Q
    ||||| |||||||||||||||| |||| | | |||||||||||||||    
T  16840903 tagaagcggagacttagacttcgtcaactatccatactttaaagagc 16840857  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 31095092 - 31095132
Alignment:
Q  201 tatcacttacgtcatttaagttatttaatgataacaagtta 241  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  31095092 tatcacttacgtcctttaagttatttaattataacaagtta 31095132  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 17411089 - 17411131
Alignment:
Q  201 tatcacttacgtcatttaagttatttaatgataacaagttagt 243  Q
    |||||||||||||||||||||||||||||  ||||||||||||    
T  17411089 tatcacttacgtcatttaagttatttaattgtaacaagttagt 17411131  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 196287 - 196258
Alignment:
Q  200 gtatcacttacgtcatttaagttatttaat 229  Q
    ||||||||||||||||||||||||||||||    
T  196287 gtatcacttacgtcatttaagttatttaat 196258  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 18080600 - 18080645
Alignment:
Q  201 tatcacttacgtcatttaagttatttaatgataacaagttagttat 246  Q
    |||||||||||||||||||||||||||||  ||| |||||||||||    
T  18080600 tatcacttacgtcatttaagttatttaattgtaataagttagttat 18080645  T

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